Additional content

This content is an additional resource for interested students, who want to learn about a wider variety of topics and commands used by scientists working on the command line on a daily basis.

Python Refresher

There is also a notebook (with solutions) that can help you to refresh your python skills: “exercise00_introduction.ipynb” for the exercise and “solution_exercise00_introduction.ipynb” for the solution. These notebooks were created by Andre Kahles, whom you may get to know in the Concept Course in Bioinformatics.

To do this notebook you have to copy it from the /nfs/nas22/fs2202/biol_micro_teaching/551-0132-00L/3_Sequence folder to your home folder (in the terminal while logged into Cousteau). Therefore, open a terminal and ssh into Cousteau and run the following commands:

# Make sure you are in a terminal and run the following commands
cp /nfs/nas22/fs2202/biol_micro_teaching/551-0132-00L/3_Sequence/*00_introduction.ipynb ~/

Back in the Jupyter-Hub the file should appear in your home folder (orange square). You can work with them by simply clicking onto the file (in the Juypter-Hub)