Pre-computed mOTUs3 profiles for 11,164 samples can be downloaded here:
here.

Pre-computed mOTU profiles used in Milanese et al. here.

Simulated human gut metagenomes based on MAGs used in Milanese et al. can be downloaded here:

simulated human gut metagenomes

Map between mOTUs 1 and mOTUs 2 clusters:

simulated human gut metagenomes