Tara Oceans publications
121. Macroscale patterns of oceanic zooplankton composition and size structure
Brandao, M.C., Benedetti, F., Martini, S., Soviadan, Y.D., Irisson, J.O., Romagnan, J.B., Elineau, A., Desnos, C., Jalabert, L., Freire, A.S., Picheral, M., Guidi, L., Gorsky, G., Bowler, C., Karp-Boss, L., Henry, N., de Vargas, C., Sullivan, M.B.; Tara Oceans Consortium Coordinators, Stemmann, L., Lombard, F., Sci Rep 11(1):15714: 2021.
120. Environmental vulnerability of the global ocean epipelagic plankton community interactome
Chaffron, S., Delage, E., Budinich, M., Vintache, D., Henry, N., Nef, C., Ardyna, M., Zayed, A.A., Junger, P.C., Galand, P.E., Lovejoy, C., Murray, A.E., Sarmento, H.; Tara Oceans coordinators, Acinas, S.G., Babin, M., Iudicone, D., Jaillon, O., Karsenti, E., Wincker, P., Karp-Boss, L., Sullivan, M.B., Bowler, C., de Vargas, C., Eveillard, D., Sci Adv 7(35):eabg1921: 2021.
119. efam: an expanded, metaproteome-supported HMM profile database of viral protein families
Zayed, A.A., Lucking, D., Mohssen, M., Cronin, D., Bolduc, B., Gregory, A.C., Hargreaves, K.R., Piehowski, P.D., White, R.A., Huang, E.L., Adkins, J.N., Roux, S., Moraru, C., Sullivan, M.B., Bioinformatics, btab451: 2021.
118. Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods
Pierella Karlusich, J.J., Pelletier, E., Lombard, F., Carsique, M., Dvorak, E., Colin, S., Picheral, M., Cornejo-Castillo, F.M., Acinas, S.G., Pepperkok, R., Karsenti, E., de Vargas, C., Wincker, P., Bowler, C., Foster, R.A., Nat Commun 12(1):4160: 2021.
117. Discovery of viral myosin genes with complex evolutionary history within plankton
Kijima, S., Delmont, T.O., Miyazaki, U., Gaia, M., Endo, H., Ogata, H., Front Microbiol 12:683294: 2021.
116. Phylogenomics of Porites from the Arabian Peninsula
Terraneo, T.I., Benzoni, F., Arrigoni, R., Baird, A.H., Mariappan, K.G., Forsman, Z.H., Wooster, M.K., Bouwmeester, J., Marshell, A., Berumen, M.L., Mol Phylogenet Evol 161:107173: 2021.
115. Carbon Dioxide Concentration Mechanisms in Natural Populations of Marine Diatoms: Insights From Tara Oceans
Pierella Karlusich, J.J., Bowler, C., Biswas, H., Front Plant Sci 12: 657821: 2021.
114. Quantitative assessment of NCLDV–host interactions predicted by co-occurrence analyses
Meng, L., Endo, H., Blanc-Mathieu, R., Chaffron, S., Hernandez-Velazquez, R., Kaneko, H., Ogata, H., mSphere 6(2):e01298-20: 2021.
113. Integrative systematics of the scleractinian coral genera Caulastraea, Erythrastrea and Oulophyllia
Arrigoni, R., D. Huang, M. L. Berumen, A. F. Budd, S. Montano, Z. T. Richards, T. I. Terraneo and F. Benzoni, Zoologica Scripta: 2021.
112. Complex Response of the Chlorarachniophyte Bigelowiella natans to Iron Availability
Kotabova, E., R. Malych, J. J. Pierella Karlusich, E. Kazamia, M. Eichner, J. Mach, E. Lesuisse, C. Bowler, O. Prasil and R. Sutak, mSystems 6(1): 2021.
111. The Ocean barcode atlas: A web service to explore the biodiversity and biogeography of marine organisms
Vernette, C., N. Henry, J. Lecubin, C. de Vargas, P. Hingamp and M. Lescot, Mol Ecol Resour: 2021.
110. Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean
Kaneko, H., R. Blanc-Mathieu, H. Endo, S. Chaffron, T. O. Delmont, M. Gaia, N. Henry, R. Hernandez-Velazquez, C. H. Nguyen, H. Mamitsuka, P. Forterre, O. Jaillon, C. de Vargas, M. B. Sullivan, C. A. Suttle, L. Guidi and H. Ogata, iScience 24(1): 102002: 2021.
109. Exploration of marine phytoplankton: From their historical appreciation to the omics era
Pierella Karlusich, J. J., F. Ibarbalz and C. Bowler, Journal of Plankton Research 42: 2020.
108. Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions
Endo, H., R. Blanc-Mathieu, Y. Li, G. Salazar, N. Henry, K. Labadie, C. de Vargas, M. B. Sullivan, C. Bowler, P. Wincker, L. Karp-Boss, S. Sunagawa and H. Ogata, Nat Ecol Evol 4(12): 1639-1649: 2020.
107. Diversity and distribution of marine heterotrophic bacteria from a large culture collection
Sanz-Saez, I., G. Salazar, P. Sanchez, E. Lara, M. Royo-Llonch, E. L. Sa, T. Lucena, M. J. Pujalte, D. Vaque, C. M. Duarte, J. M. Gasol, C. Pedros-Alio, O. Sanchez and S. G. Acinas, BMC Microbiol 20(1): 207: 2020.
106. Investigating population-scale allelic differential expression in wild populations of Oithona similis (Cyclopoida, Claus, 1866)
Laso-Jadart, R., K. Sugier, E. Petit, K. Labadie, P. Peterlongo, C. Ambroise, P. Wincker, J. L. Jamet and M. A. Madoui, Ecol Evol 10(16): 8894-8905: 2020.
105. Mesonia oceanica sp. nov., isolated from oceans during the Tara oceans expedition, with a preference for mesopelagic waters
Lucena, T., I. Sanz-Saez, D. R. Arahal, S. G. Acinas, O. Sanchez, C. Pedros-Alio, R. Aznar and M. J. Pujalte, Int J Syst Evol Microbiol 70(7): 4329-4338: 2020.
104. Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics
Vorobev, A., M. Dupouy, Q. Carradec, T. O. Delmont, A. Annamale, P. Wincker and E. Pelletier, Genome Res 30(4): 647-659: 2020.
103. Towards a rigorous species delimitation framework for scleractinian corals based on RAD sequencing: the case study of Leptastrea from the Indo-Pacific
Arrigoni, R., M. Berumen, K. Mariappan, P. Beck, A. Hulver, S. Montano, M. Pichon, G. Strona, T. I. Terraneo and F. Benzoni, Coral Reefs 39: 2020.
102. Diatoms Are Selective Segregators in Global Ocean Planktonic Communities
Vincent, F. and C. Bowler, mSystems 5(1): 2020.
101. Diversity and evolution of bacterial bioluminescence genes in the global ocean
Vannier, T., P. Hingamp, F. Turrel, L. Tanet, M. Lescot and Y. Timsit, NAR Genom Bioinform 2(2): lqaa018: 2020.
100. Tara Oceans: towards global ocean ecosystems biology
Sunagawa, S., S. G. Acinas, P. Bork, C. Bowler, C. Tara Oceans, D. Eveillard, G. Gorsky, L. Guidi, D. Iudicone, E. Karsenti, F. Lombard, H. Ogata, S. Pesant, M. B. Sullivan, P. Wincker and C. de Vargas, Nat Rev Microbiol 18(8): 428-445: 2020.
99. Genome Resolved Biogeography of Mamiellales
Leconte, J., L. F. Benites, T. Vannier, P. Wincker, G. Piganeau and O. Jaillon, Genes (Basel) 11(1): 2020.
97. Into the bloom: Molecular response of pelagic tunicates to fluctuating food availability
Sordino, P., S. D'Aniello, E. Pelletier, P. Wincker, V. Nittoli, L. Stemmann, M. G. Mazzocchi, F. Lombard, D. Iudicone and L. Caputi, Mol Ecol 29(2): 292-307: 2020.
96. Ecological and functional capabilities of an uncultured Kordia sp
Royo-Llonch, M., P. Sanchez, J. M. Gonzalez, C. Pedros-Alio and S. G. Acinas, Syst Appl Microbiol 43(1): 126045: 2020.
95. Observational Needs Supporting Marine Ecosystems Modeling and Forecasting: From the Global Ocean to Regional and Coastal Systems
Capotondi, A., M. Jacox, C. Bowler, M. Kavanaugh, P. Lehodey, D. Barrie, S. Brodie, S. Chaffron, W. Cheng, D. F. Dias, D. Eveillard, L. Guidi, D. Iudicone, N. S. Lovenduski, J. A. Nye, I. Ortiz, D. Pirhalla, M. Pozo Buil, V. Saba, S. Sheridan, S. Siedlecki, A. Subramanian, C. de Vargas, E. Di Lorenzo, S. C. Doney, A. J. Hermann, T. Joyce, M. Merrifield, A. J. Miller, F. Not and S. Pesant, Frontiers in Marine Science 6(623): 2019.
94. Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
Salazar, G., L. Paoli, A. Alberti, J. Huerta-Cepas, H. J. Ruscheweyh, M. Cuenca, C. M. Field, L. P. Coelho, C. Cruaud, S. Engelen, A. C. Gregory, K. Labadie, C. Marec, E. Pelletier, M. Royo-Llonch, S. Roux, P. Sanchez, H. Uehara, A. A. Zayed, G. Zeller, M. Carmichael, C. Dimier, J. Ferland, S. Kandels, M. Picheral, S. Pisarev, J. Poulain, C. Tara Oceans, S. G. Acinas, M. Babin, P. Bork, C. Bowler, C. de Vargas, L. Guidi, P. Hingamp, D. Iudicone, L. Karp-Boss, E. Karsenti, H. Ogata, S. Pesant, S. Speich, M. B. Sullivan, P. Wincker and S. Sunagawa, Cell 179(5): 1068-1083 e1021: 2019.
93. Global Trends in Marine Plankton Diversity across Kingdoms of Life
Ibarbalz, F. M., N. Henry, M. C. Brandao, S. Martini, G. Busseni, H. Byrne, L. P. Coelho, H. Endo, J. M. Gasol, A. C. Gregory, F. Mahe, J. Rigonato, M. Royo-Llonch, G. Salazar, I. Sanz-Saez, E. Scalco, D. Soviadan, A. A. Zayed, A. Zingone, K. Labadie, J. Ferland, C. Marec, S. Kandels, M. Picheral, C. Dimier, J. Poulain, S. Pisarev, M. Carmichael, S. Pesant, C. Tara Oceans, M. Babin, E. Boss, D. Iudicone, O. Jaillon, S. G. Acinas, H. Ogata, E. Pelletier, L. Stemmann, M. B. Sullivan, S. Sunagawa, L. Bopp, C. de Vargas, L. Karp-Boss, P. Wincker, F. Lombard, C. Bowler and L. Zinger, Cell 179(5): 1084-1097 e1021: 2019.
92. Assessing the viral content of uncultured picoeukaryotes in the global-ocean by single cell genomics
Castillo, Y. M., J. F. Mangot, L. F. Benites, R. Logares, M. Kuronishi, H. Ogata, O. Jaillon, R. Massana, M. Sebastian and D. Vaque, Mol Ecol 28(18): 4272-4289: 2019.
91. Single cell ecogenomics reveals mating types of individual cells and ssDNA viral infections in the smallest photosynthetic eukaryotes
Benites, L. F., N. Poulton, K. Labadie, M. E. Sieracki, N. Grimsley and G. Piganeau, Philos Trans R Soc Lond B Biol Sci 374(1786): 20190089: 2019.
90. Meta-omics reveals genetic flexibility of diatom nitrogen transporters in response to environmental changes
Busseni, G., F. R. J. Vieira, A. Amato, E. Pelletier, J. J. Pierella Karlusich, M. I. Ferrante, P. Wincker, A. Rogato, C. Bowler, R. Sanges, L. Maiorano, M. Chiurazzi, M. R. d'Alcala, L. Caputi and D. Iudicone, Mol Biol Evol: 2019.
89. Phytoplankton in the Tara Ocean
Pierella Karlusich, J. J., F. Ibarbalz and C. Bowler, Annual Review of Marine Science 12: 233-265: 2020.
88. The Earth Is Small for Leviathans: Long Distance Dispersal of Giant Viruses across Aquatic Environments
Li, Y., H. Endo, Y. Gotoh, H. Watai, N. Ogawa, R. Blanc-Mathieu, T. Yoshida and H. Ogata, Microbes Environ 34(3): 334-339: 2019.
87. Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems
Sieracki, M. E., N. J. Poulton, O. Jaillon, P. Wincker, C. de Vargas, L. Rubinat-Ripoll, R. Stepanauskas, R. Logares and R. Massana, Sci Rep 9(1): 6025: 2019.
86. Marine DNA Viral Macro- and Microdiversity from Pole to Pole
Gregory, A. C., A. A. Zayed, N. Conceicao-Neto, B. Temperton, B. Bolduc, A. Alberti, M. Ardyna, K. Arkhipova, M. Carmichael, C. Cruaud, C. Dimier, G. Dominguez-Huerta, J. Ferland, S. Kandels, Y. Liu, C. Marec, S. Pesant, M. Picheral, S. Pisarev, J. Poulain, J. E. Tremblay, D. Vik, C. Tara Oceans, M. Babin, C. Bowler, A. I. Culley, C. de Vargas, B. E. Dutilh, D. Iudicone, L. Karp-Boss, S. Roux, S. Sunagawa, P. Wincker and M. B. Sullivan, Cell 177(5): 1109-1123 e1114: 2019.
85. Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems
Caputi, L., Q. Carradec, D. Eveillard, A. Kirilovsky, E. Pelletier, J. J. Pierella Karlusich, F. Vieira, E. Villar, S. Chaffron, S. Malviya, E. Scalco, S. Acinas, A. Alberti, J.-M. Aury, A.-S. Benoiston, A. Bertrand, T. Biard, L. Bittner, M. Boccara and J. Weissenbach, Global Biogeochemical Cycles 33: 2019.
84. Mixotrophic protists display contrasted biogeographies in the global ocean
Faure, E., F. Not, A. S. Benoiston, K. Labadie, L. Bittner and S. D. Ayata, ISME J 13(4): 1072-1083: 2019.
83. Discovering millions of plankton genomic markers from the Atlantic Ocean and the Mediterranean Sea
Arif, M., J. Gauthier, K. Sugier, D. Iudicone, O. Jaillon, P. Wincker, P. Peterlongo and M. A. Madoui, Mol Ecol Resour 19(2): 526-535: 2019.
82. Degenerate PCR Primers to Reveal the Diversity of Giant Viruses in Coastal Waters
Li, Y., P. Hingamp, H. Watai, H. Endo, T. Yoshida and H. Ogata, Viruses 10: 496: 2018.
81. UCYN-A3, a newly characterized open ocean sublineage of the symbiotic N2 -fixing cyanobacterium Candidatus Atelocyanobacterium thalassa
Cornejo-Castillo, F. M., M. D. C. Munoz-Marin, K. A. Turk-Kubo, M. Royo-Llonch, H. Farnelid, S. G. Acinas and J. P. Zehr, Environ Microbiol 21(1): 111-124: 2019.
80. Clade-specific diversification dynamics of marine diatoms since the Jurassic
Lewitus, E., L. Bittner, S. Malviya, C. Bowler and H. Morlon, Nat Ecol Evol 2(11): 1715-1723: 2018.
79. Morphological and genetic divergence between Mediterranean and Caribbean populations of Madracis pharensis (Heller 1868) (Scleractinia, Pocilloporidae): Too much for one species?
Benzoni, F., R. Arrigoni, M. Berumen, M. Taviani, P. Bongaerts and P. Frade, Zootaxa 4471: 473–492: 2018.
78. Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean
Decelle, J., Q. Carradec, X. Pochon, N. Henry, S. Romac, F. Mahe, M. Dunthorn, A. Kourlaiev, C. R. Voolstra, P. Wincker and C. de Vargas, Curr Biol 28(22): 3625-3633 e3623: 2018.
77. Coral responses to a repeat bleaching event in Mayotte in 2010
Obura, D. O., L. Bigot and F. Benzoni, PeerJ 6: e5305: 2018.
76. Ubiquitous abundance distribution of non-dominant plankton across the global ocean
Ser-Giacomi, E., L. Zinger, S. Malviya, C. De Vargas, E. Karsenti, C. Bowler and S. De Monte, Nat Ecol Evol 2(8): 1243-1249: 2018.
75. The Ocean Gene Atlas: exploring the biogeography of plankton genes online
Villar, E., T. Vannier, C. Vernette, M. Lescot, M. Cuenca, A. Alexandre, P. Bachelerie, T. Rosnet, E. Pelletier, S. Sunagawa and P. Hingamp, Nucleic Acids Res 46(W1): W289-W295: 2018.
74. Endocytosis-mediated siderophore uptake as a strategy for Fe acquisition in diatoms
Kazamia, E., R. Sutak, J. Paz-Yepes, R. G. Dorrell, F. R. J. Vieira, J. Mach, J. Morrissey, S. Leon, F. Lam, E. Pelletier, J. M. Camadro, C. Bowler and E. Lesuisse, Sci Adv 4(5): eaar4536: 2018.
73. Uncovering hidden coral diversity: a new cryptic lobophylliid scleractinian from the Indian Ocean
Arrigoni, R., M. Berumen, J. Stolarski, T. I. Terraneo and F. Benzoni, Cladistics 35: 2018.
72. Taxon Richness of Megaviridae Exceeds those of Bacteria and Archaea in the Ocean
Mihara, T., H. Koyano, P. Hingamp, N. Grimsley, S. Goto and H. Ogata, Microbes Environ 33(2): 162-171: 2018.
71. Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export
Leblanc, K., B. Queguiner, F. Diaz, V. Cornet, M. Michel-Rodriguez, X. Durrieu de Madron, C. Bowler, S. Malviya, M. Thyssen, G. Gregori, M. Rembauville, O. Grosso, J. Poulain, C. de Vargas, M. Pujo-Pay and P. Conan, Nat Commun 9(1): 953: 2018.
70. Competition between Silicifiers and Non-silicifiers in the Past and Present Ocean and Its Evolutionary Impacts
Hendry, K. R., A. O. Marron, F. Vincent, D. J. Conley, M. Gehlen, F. M. Ibarbalz, B. Quéguiner and C. Bowler, Frontiers in Marine Science 5(22): 2018.
69. Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria
Grebert, T., H. Dore, F. Partensky, G. K. Farrant, E. S. Boss, M. Picheral, L. Guidi, S. Pesant, D. J. Scanlan, P. Wincker, S. G. Acinas, D. M. Kehoe and L. Garczarek, Proc Natl Acad Sci U S A 115(9): E2010-E2019: 2018.
68. Neobodonids are dominant kinetoplastids in the global ocean
Flegontova, O., P. Flegontov, S. Malviya, J. Poulain, C. de Vargas, C. Bowler, J. Lukes and A. Horak, Environ Microbiol 20(2): 878-889: 2018.
67. The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean
Vincent, F. J., S. Colin, S. Romac, E. Scalco, L. Bittner, Y. Garcia, R. M. Lopes, J. R. Dolan, A. Zingone, C. de Vargas and C. Bowler, ISME J 12(4): 1094-1108: 2018.
66. Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan
Yoshida, T., Y. Nishimura, H. Watai, N. Haruki, D. Morimoto, H. Kaneko, T. Honda, K. Yamamoto, P. Hingamp, Y. Sako, S. Goto and H. Ogata, ISME J 12(5): 1287-1295: 2018.
65. Influence of diatom diversity on the ocean biological carbon pump
Tréguer, P., C. Bowler, B. Moriceau, S. Dutkiewicz, M. Gehlen, O. Aumont, L. Bittner, R. Dugdale, Z. Finkel, D. Iudicone, O. Jahn, L. Guidi, M. Lasbleiz, K. Leblanc, M. Levy and P. Pondaven, Nature Geoscience 11(1): 27-37: 2018.
64. Pan-Arctic optical characteristics of colored dissolved organic matter: Tracing dissolved organic carbon in changing Arctic waters using satellite ocean color data
Matsuoka, A., E. Boss, M. Babin, L. Karp-Boss, M. Hafez, A. Chekalyuk, C. W. Proctor, P. J. Werdell and A. Bricaud, Remote Sensing of Environment 200: 89-101: 2017.
63. Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
Seeleuthner, Y., S. Mondy, V. Lombard, Q. Carradec, E. Pelletier, M. Wessner, J. Leconte, J. F. Mangot, J. Poulain, K. Labadie, R. Logares, S. Sunagawa, V. de Berardinis, M. Salanoubat, C. Dimier, S. Kandels-Lewis, M. Picheral, S. Searson, C. Tara Oceans, S. Pesant, N. Poulton, R. Stepanauskas, P. Bork, C. Bowler, P. Hingamp, M. B. Sullivan, D. Iudicone, R. Massana, J. M. Aury, B. Henrissat, E. Karsenti, O. Jaillon, M. Sieracki, C. de Vargas and P. Wincker, Nat Commun 9(1): 310: 2018.
62. A global ocean atlas of eukaryotic genes
Carradec, Q., E. Pelletier, C. Da Silva, A. Alberti, Y. Seeleuthner, R. Blanc-Mathieu, G. Lima-Mendez, F. Rocha, L. Tirichine, K. Labadie, A. Kirilovsky, A. Bertrand, S. Engelen, M. A. Madoui, R. Meheust, J. Poulain, S. Romac, D. J. Richter, G. Yoshikawa, C. Dimier, S. Kandels-Lewis, M. Picheral, S. Searson, C. Tara Oceans, O. Jaillon, J. M. Aury, E. Karsenti, M. B. Sullivan, S. Sunagawa, P. Bork, F. Not, P. Hingamp, J. Raes, L. Guidi, H. Ogata, C. de Vargas, D. Iudicone, C. Bowler and P. Wincker, Nat Commun 9(1): 373: 2018.
61. Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages
Morard, R., M. J. Garet-Delmas, F. Mahe, S. Romac, J. Poulain, M. Kucera and C. de Vargas, Sci Rep 8(1): 2539: 2018.
60. Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes
Colin, S., L. P. Coelho, S. Sunagawa, C. Bowler, E. Karsenti, P. Bork, R. Pepperkok and C. de Vargas, Elife 6: 2017.
59. Biological and physical influences on marine snowfall at the equator
Kiko, R., A. Biastoch, P. Brandt, S. Cravatte, H. Hauss, R. Hummels, I. Kriest, F. Marin, A. M. P. McDonnell, A. Oschlies, M. Picheral, F. U. Schwarzkopf, A. M. Thurnherr and L. Stemmann, Nature Geoscience 10(11): 852-858: 2017.
58. Evaluation of single-cell genomics to address evolutionary questions using three SAGs of the choanoflagellate Monosiga brevicollis
Lopez-Escardo, D., X. Grau-Bove, A. Guillaumet-Adkins, M. Gut, M. E. Sieracki and I. Ruiz-Trillo, Sci Rep 7(1): 11025: 2017.
57. Exploring Microdiversity in Novel Kordia sp. (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes
Royo-Llonch, M., I. Ferrera, F. M. Cornejo-Castillo, P. Sanchez, G. Salazar, R. Stepanauskas, J. M. Gonzalez, M. E. Sieracki, S. Speich, L. Stemmann, C. Pedros-Alio and S. G. Acinas, Front Microbiol 8: 1317: 2017.
56. New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona
Madoui, M. A., J. Poulain, K. Sugier, M. Wessner, B. Noel, L. Berline, K. Labadie, A. Cornils, L. Blanco-Bercial, L. Stemmann, J. L. Jamet and P. Wincker, Mol Ecol 26(17): 4467-4482: 2017.
55. The evolution of diatoms and their biogeochemical functions
Benoiston, A. S., F. M. Ibarbalz, L. Bittner, L. Guidi, O. Jahn, S. Dutkiewicz and C. Bowler, Philos Trans R Soc Lond B Biol Sci 372(1728): 2017.
54. A myovirus encoding both photosystem I and II proteins enhances cyclic electron flow in infected Prochlorococcus cells
Fridman, S., J. Flores-Uribe, S. Larom, O. Alalouf, O. Liran, I. Yacoby, F. Salama, B. Bailleul, F. Rappaport, T. Ziv, I. Sharon, F. M. Cornejo-Castillo, A. Philosof, C. L. Dupont, P. Sanchez, S. G. Acinas, F. L. Rohwer, D. Lindell and O. Beja, Nat Microbiol 2(10): 1350-1357: 2017.
53. Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
Alberti, A., J. Poulain, S. Engelen, K. Labadie, S. Romac, I. Ferrera, G. Albini, J. M. Aury, C. Belser, A. Bertrand, C. Cruaud, C. Da Silva, C. Dossat, F. Gavory, S. Gas, J. Guy, M. Haquelle, E. Jacoby, O. Jaillon, A. Lemainque, E. Pelletier, G. Samson, M. Wessner, T. Genoscope Technical, S. G. Acinas, M. Royo-Llonch, F. M. Cornejo-Castillo, R. Logares, B. Fernandez-Gomez, C. Bowler, G. Cochrane, C. Amid, P. T. Hoopen, C. De Vargas, N. Grimsley, E. Desgranges, S. Kandels-Lewis, H. Ogata, N. Poulton, M. E. Sieracki, R. Stepanauskas, M. B. Sullivan, J. R. Brum, M. B. Duhaime, B. T. Poulos, B. L. Hurwitz, C. Tara Oceans Consortium, S. Pesant, E. Karsenti and P. Wincker, Sci Data 4: 170093: 2017.
52. The Arctic Ocean as a dead end for floating plastics in the North Atlantic branch of the Thermohaline Circulation
Cózar, A., E. Marti, C. Duarte, J. Lomas, E. Sebille, T. Ballatore, V. Eguíluz, J. González-Gordillo, M. L. Pedrotti, F. Echevarría, R. Troublè and X. Irigoien, Science Advances 3: e1600582: 2017.
51. Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean
Nishimura, Y., H. Watai, T. Honda, T. Mihara, K. Omae, S. Roux, R. Blanc-Mathieu, K. Yamamoto, P. Hingamp, Y. Sako, M. B. Sullivan, S. Goto, H. Ogata and T. Yoshida, mSphere 2(2): 2017.
50. Biogeography and diversity of Collodaria (Radiolaria) in the global ocean
Biard, T., E. Bigeard, S. Audic, J. Poulain, A. Gutierrez-Rodriguez, S. Pesant, L. Stemmann and F. Not, ISME J 11(6): 1331-1344: 2017.
49. A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications
Arrigoni, R., B. Vacherie, F. Benzoni, F. Stefani, E. Karsenti, O. Jaillon, F. Not, F. Nunes, C. Payri, P. Wincker and V. Barbe, Mol Ecol Resour 17(5): 1054-1071: 2017.
48. Survey of the green picoalga Bathycoccus genomes in the global ocean
Vannier, T., J. Leconte, Y. Seeleuthner, S. Mondy, E. Pelletier, J. M. Aury, C. de Vargas, M. Sieracki, D. Iudicone, D. Vaulot, P. Wincker and O. Jaillon, Sci Rep 6: 37900: 2016.
47. Extreme Diversity of Diplonemid Eukaryotes in the Ocean
Flegontova, O., P. Flegontov, S. Malviya, S. Audic, P. Wincker, C. de Vargas, C. Bowler, J. Lukes and A. Horak, Curr Biol 26(22): 3060-3065: 2016.
46. Full-field interferometry for counting and differentiating aquatic biotic nanoparticles: from laboratory to Tara Oceans
Boccara, M., Y. Fedala, C. V. Bryan, M. Bailly-Bechet, C. Bowler and A. C. Boccara, Biomed Opt Express 7(9): 3736-3746: 2016.
45. Species delimitation in the reef coral genera Echinophyllia and Oxypora (Scleractinia, Lobophylliidae) with a description of two new species
Arrigoni, R., M. L. Berumen, C. A. Chen, T. I. Terraneo, A. H. Baird, C. Payri and F. Benzoni, Mol Phylogenet Evol 105: 146-159: 2016.
44. When forms meet genes: Revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus
Arrigoni, R., F. Benzoni, D. Huang, H. Fukami, C. Chen, M. Berumen, M. Hoogenboom, D. Thomson, B. Hoeksema, A. Budd, Y. Zayasu, T. I. Terraneo, Y. Kitano and A. Baird, Contributions to zoology Bijdragen tot de dierkunde 85: 387-422: 2016.
43. Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
Roux, S., J. R. Brum, B. E. Dutilh, S. Sunagawa, M. B. Duhaime, A. Loy, B. T. Poulos, N. Solonenko, E. Lara, J. Poulain, S. Pesant, S. Kandels-Lewis, C. Dimier, M. Picheral, S. Searson, C. Cruaud, A. Alberti, C. M. Duarte, J. M. Gasol, D. Vaque, C. Tara Oceans, P. Bork, S. G. Acinas, P. Wincker and M. B. Sullivan, Nature 537(7622): 689-693: 2016.
42. Species delimitation in the coral genus Goniopora (Scleractinia, Poritidae) from the Saudi Arabian Red Sea
Terraneo, T. I., F. Benzoni, R. Arrigoni and M. L. Berumen, Mol Phylogenet Evol 102: 278-294: 2016.
41. Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria
Farrant, G. K., H. Dore, F. M. Cornejo-Castillo, F. Partensky, M. Ratin, M. Ostrowski, F. D. Pitt, P. Wincker, D. J. Scanlan, D. Iudicone, S. G. Acinas and L. Garczarek, Proc Natl Acad Sci U S A 113(24): E3365-3374: 2016.
40. Biogeochemical characteristics of a long-lived anticyclonic eddy in the eastern South Pacific Ocean
Cornejo-D'Ottone, M., L. Bravo, M. Ramos, O. Pizarro, J. Karstensen, M. Gallegos, M. Correa-Ramirez, N. Silva, L. Farias and L. Karp-Boss, Biogeosciences 13: 2971-2979: 2016.
39. Global genetic capacity for mixotrophy in marine picocyanobacteria
Yelton, A. P., S. G. Acinas, S. Sunagawa, P. Bork, C. Pedros-Alio and S. W. Chisholm, ISME J 10(12): 2946-2957: 2016.
38. In situ imaging reveals the biomass of giant protists in the global ocean
Biard, T., L. Stemmann, M. Picheral, N. Mayot, P. Vandromme, H. Hauss, G. Gorsky, L. Guidi, R. Kiko and F. Not, Nature 532(7600): 504-507: 2016.
37. Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton
Cornejo-Castillo, F. M., A. M. Cabello, G. Salazar, P. Sanchez-Baracaldo, G. Lima-Mendez, P. Hingamp, A. Alberti, S. Sunagawa, P. Bork, C. de Vargas, J. Raes, C. Bowler, P. Wincker, J. P. Zehr, J. M. Gasol, R. Massana and S. G. Acinas, Nat Commun 7: 11071: 2016.
36. Insights into global diatom distribution and diversity in the world's ocean
Malviya, S., E. Scalco, S. Audic, F. Vincent, A. Veluchamy, J. Poulain, P. Wincker, D. Iudicone, C. de Vargas, L. Bittner, A. Zingone and C. Bowler, Proc Natl Acad Sci U S A 113(11): E1516-1525: 2016.
35. Illuminating structural proteins in viral dark matter with metaproteomics
Brum, J. R., J. C. Ignacio-Espinoza, E. H. Kim, G. Trubl, R. M. Jones, S. Roux, N. C. VerBerkmoes, V. I. Rich and M. B. Sullivan, Proc Natl Acad Sci U S A 113(9): 2436-2441: 2016.
34. Plankton networks driving carbon export in the oligotrophic ocean
Guidi, L., S. Chaffron, L. Bittner, D. Eveillard, A. Larhlimi, S. Roux, Y. Darzi, S. Audic, L. Berline, J. Brum, L. P. Coelho, J. C. I. Espinoza, S. Malviya, S. Sunagawa, C. Dimier, S. Kandels-Lewis, M. Picheral, J. Poulain, S. Searson, c. Tara Oceans, L. Stemmann, F. Not, P. Hingamp, S. Speich, M. Follows, L. Karp-Boss, E. Boss, H. Ogata, S. Pesant, J. Weissenbach, P. Wincker, S. G. Acinas, P. Bork, C. de Vargas, D. Iudicone, M. B. Sullivan, J. Raes, E. Karsenti, C. Bowler and G. Gorsky, Nature 532(7600): 465-470: 2016.
33. The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.)
Mordret, S., S. Romac, N. Henry, S. Colin, M. Carmichael, C. Berney, S. Audic, D. J. Richter, X. Pochon, C. de Vargas and J. Decelle, ISME J 10(6): 1424-1436: 2016.
32. Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes
Clerissi, C., Y. Desdevises, S. Romac, S. Audic, C. de Vargas, S. G. Acinas, R. Casotti, J. Poulain, P. Wincker, P. Hingamp, H. Ogata and N. Grimsley, Environ Microbiol Rep 7(6): 979-989: 2015.
31. Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages
Lescot, M., P. Hingamp, K. K. Kojima, E. Villar, S. Romac, A. Veluchamy, M. Boccara, O. Jaillon, D. Iudicone, C. Bowler, P. Wincker, J. M. Claverie and H. Ogata, ISME J 10(5): 1134-1146: 2016.
30. Closing the gaps on the viral photosystem-I psaDCAB gene organization
Roitman, S., J. Flores-Uribe, A. Philosof, B. Knowles, F. Rohwer, J. C. Ignacio-Espinoza, M. B. Sullivan, F. M. Cornejo-Castillo, P. Sanchez, S. G. Acinas, C. L. Dupont and O. Beja, Environ Microbiol 17(12): 5100-5108: 2015.
29. Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
Le Bescot, N., F. Mahe, S. Audic, C. Dimier, M. J. Garet, J. Poulain, P. Wincker, C. de Vargas and R. Siano, Environ Microbiol 18(2): 609-626: 2016.
28. A new look at ocean carbon remineralization for estimating deep-water sequestration
Guidi, L., L. Legendre, G. Reygondeau, J. Uitz, L. Stemmann and S. Henson, Global Biogeochemical Cycles: n/a-n/a: 2015.
27. Regional ocean-colour chlorophyll algorithms for the Red Sea
Brewin, R. J. W., D. E. Raitsos, G. Dall'Olmo, N. Zarokanellos, T. Jackson, M.-F. Racault, E. S. Boss, S. Sathyendranath, B. H. Jones and I. Hoteit, Remote Sensing of Environment 165: 64-85: 2015.
26. Open science resources for the discovery and analysis of Tara Oceans data
Pesant, S., F. Not, M. Picheral, S. Kandels-Lewis, N. Le Bescot, G. Gorsky, D. Iudicone, E. Karsenti, S. Speich, R. Trouble, C. Dimier, S. Searson and C. Tara Oceans Consortium, Sci Data 2: 150023: 2015.
25. Determinants of community structure in the global plankton interactome
Lima-Mendez, G., K. Faust, N. Henry, J. Decelle, S. Colin, F. Carcillo, S. Chaffron, J. C. Ignacio-Espinosa, S. Roux, F. Vincent, L. Bittner, Y. Darzi, J. Wang, S. Audic, L. Berline, G. Bontempi, A. M. Cabello, L. Coppola, F. M. Cornejo-Castillo, F. d'Ovidio, L. De Meester, I. Ferrera, M. J. Garet-Delmas, L. Guidi, E. Lara, S. Pesant, M. Royo-Llonch, G. Salazar, P. Sanchez, M. Sebastian, C. Souffreau, C. Dimier, M. Picheral, S. Searson, S. Kandels-Lewis, c. Tara Oceans, G. Gorsky, F. Not, H. Ogata, S. Speich, L. Stemmann, J. Weissenbach, P. Wincker, S. G. Acinas, S. Sunagawa, P. Bork, M. B. Sullivan, E. Karsenti, C. Bowler, C. de Vargas and J. Raes, Science 348(6237): 1262073: 2015.
24. Eukaryotic plankton diversity in the sunlit ocean
de Vargas, C., S. Audic, N. Henry, J. Decelle, F. Mahe, R. Logares, E. Lara, C. Berney, N. Le Bescot, I. Probert, M. Carmichael, J. Poulain, S. Romac, S. Colin, J. M. Aury, L. Bittner, S. Chaffron, M. Dunthorn, S. Engelen, O. Flegontova, L. Guidi, A. Horak, O. Jaillon, G. Lima-Mendez, J. Lukes, S. Malviya, R. Morard, M. Mulot, E. Scalco, R. Siano, F. Vincent, A. Zingone, C. Dimier, M. Picheral, S. Searson, S. Kandels-Lewis, C. Tara Oceans, S. G. Acinas, P. Bork, C. Bowler, G. Gorsky, N. Grimsley, P. Hingamp, D. Iudicone, F. Not, H. Ogata, S. Pesant, J. Raes, M. E. Sieracki, S. Speich, L. Stemmann, S. Sunagawa, J. Weissenbach, P. Wincker and E. Karsenti, Science 348(6237): 1261605: 2015.
23. Structure and function of the global ocean microbiome
Sunagawa, S., L. P. Coelho, S. Chaffron, J. R. Kultima, K. Labadie, G. Salazar, B. Djahanschiri, G. Zeller, D. R. Mende, A. Alberti, F. M. Cornejo-Castillo, P. I. Costea, C. Cruaud, F. d'Ovidio, S. Engelen, I. Ferrera, J. M. Gasol, L. Guidi, F. Hildebrand, F. Kokoszka, C. Lepoivre, G. Lima-Mendez, J. Poulain, B. T. Poulos, M. Royo-Llonch, H. Sarmento, S. Vieira-Silva, C. Dimier, M. Picheral, S. Searson, S. Kandels-Lewis, c. Tara Oceans, C. Bowler, C. de Vargas, G. Gorsky, N. Grimsley, P. Hingamp, D. Iudicone, O. Jaillon, F. Not, H. Ogata, S. Pesant, S. Speich, L. Stemmann, M. B. Sullivan, J. Weissenbach, P. Wincker, E. Karsenti, J. Raes, S. G. Acinas and P. Bork, Science 348(6237): 1261359: 2015.
22. Patterns and ecological drivers of ocean viral communities
Brum, J. R., J. C. Ignacio-Espinoza, S. Roux, G. Doulcier, S. G. Acinas, A. Alberti, S. Chaffron, C. Cruaud, C. de Vargas, J. M. Gasol, G. Gorsky, A. C. Gregory, L. Guidi, P. Hingamp, D. Iudicone, F. Not, H. Ogata, S. Pesant, B. T. Poulos, S. M. Schwenck, S. Speich, C. Dimier, S. Kandels-Lewis, M. Picheral, S. Searson, C. Tara Oceans, P. Bork, C. Bowler, S. Sunagawa, P. Wincker, E. Karsenti and M. B. Sullivan, Science 348(6237): 1261498: 2015.
21. Environmental characteristics of Agulhas rings affect interocean plankton transport
Villar, E., G. K. Farrant, M. Follows, L. Garczarek, S. Speich, S. Audic, L. Bittner, B. Blanke, J. R. Brum, C. Brunet, R. Casotti, A. Chase, J. R. Dolan, F. d'Ortenzio, J. P. Gattuso, N. Grima, L. Guidi, C. N. Hill, O. Jahn, J. L. Jamet, H. Le Goff, C. Lepoivre, S. Malviya, E. Pelletier, J. B. Romagnan, S. Roux, S. Santini, E. Scalco, S. M. Schwenck, A. Tanaka, P. Testor, T. Vannier, F. Vincent, A. Zingone, C. Dimier, M. Picheral, S. Searson, S. Kandels-Lewis, C. Tara Oceans, S. G. Acinas, P. Bork, E. Boss, C. de Vargas, G. Gorsky, H. Ogata, S. Pesant, M. B. Sullivan, S. Sunagawa, P. Wincker, E. Karsenti, C. Bowler, F. Not, P. Hingamp and D. Iudicone, Science 348(6237): 1261447: 2015.
20. Comprehensive model of annual plankton succession based on the whole-plankton time series approach
Romagnan, J. B., L. Legendre, L. Guidi, J. L. Jamet, D. Jamet, L. Mousseau, M. L. Pedrotti, M. Picheral, G. Gorsky, C. Sardet and L. Stemmann, PLoS One 10(3): e0119219: 2015.
19. Evolutionary history of Chaetognatha inferred from molecular and morphological data: a case study for body plan simplification
Gasmi, S., G. Neve, N. Pech, S. Tekaya, A. Gilles and Y. Perez, Front Zool 11(1): 84: 2014.
18. Taxonomy and phylogenetic relationships of the coral genera Australomussa and Parascolymia (Scleractinia, Lobophylliidae)
Arrigoni, R., R. Z.T, C. Chen, A. Baird and F. Benzoni, Contributions to Zoology Bijdragen tot de dierkunde 83: 195-215: 2014.
17. A phylogeny reconstruction of the Dendrophylliidae (Cnidaria, Scleractinia) based on molecular and micromorphological criteria, and its ecological implications
Arrigoni, R., Y. Kitano, J. Stolarski, B. Hoeksema, H. Fukami, F. Stefani, P. Galli, S. Montano, E. Castoldi and F. Benzoni, Zoologica Scripta 43: 661-688: 2014.
16. Validation of a new catalysed reporter deposition-fluorescence in situ hybridization probe for the accurate quantification of marine Bacteroidetes populations
Acinas, S. G., I. Ferrera, H. Sarmento, C. Diez-Vives, I. Forn, C. Ruiz-Gonzalez, F. M. Cornejo-Castillo, G. Salazar and J. M. Gasol, Environ Microbiol 17(10): 3557-3569: 2015.
15. An inexpensive, accurate, and precise wet-mount method for enumerating aquatic viruses
Cunningham, B. R., J. R. Brum, S. M. Schwenck, M. B. Sullivan and S. G. John, Appl Environ Microbiol 81(9): 2995-3000: 2015.
14. Phylogenetic relationships and revision of the genus Blastomussa (Cnidaria: Anthozoa: Scleractinia) with description of a new species
Benzoni, F., R. Arrigoni, Z. Waheed, F. Stefani and B. Hoeksema, The Raffles bulletin of zoology 62: 358-378: 2014.
13. Unveiling of the diversity of Prasinoviruses (Phycodnaviridae) in marine samples by using high-throughput sequencing analyses of PCR-amplified DNA polymerase and major capsid protein genes
Clerissi, C., N. Grimsley, H. Ogata, P. Hingamp, J. Poulain and Y. Desdevises, Appl Environ Microbiol 80(10): 3150-3160: 2014.
12. Decomposition of in situ particulate absorption spectra
Chase, A., E. Boss, R. Zaneveld, A. Bricaud, H. Claustre, J. Ras, G. Dall’Olmo and T. K. Westberry, Methods in Oceanography 7: 110-124: 2013.
11. The characteristics of particulate absorption, scattering and attenuation coefficients in the surface ocean; Contribution of the Tara Oceans expedition
Boss, E., M. Picheral, T. Leeuw, A. Chase, E. Karsenti, G. Gorsky, L. Taylor, W. Slade, J. Ras and H. Claustre, Methods in Oceanography 7: 52-62: 2013.
10. Bioprospecting marine plankton
Abida, H., S. Ruchaud, L. Rios, A. Humeau, I. Probert, C. De Vargas, S. Bach and C. Bowler, Mar Drugs 11(11): 4594-4611: 2013.
9. Underway sampling of marine inherent optical properties on the Tara Oceans expedition as a novel resource for ocean color satellite data product validation
Werdell, P. J., C. W. Proctor, E. Boss, T. Leeuw and M. Ouhssain, Methods in Oceanography 7: 40-51: 2013.
8. Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
Logares, R., S. Sunagawa, G. Salazar, F. M. Cornejo-Castillo, I. Ferrera, H. Sarmento, P. Hingamp, H. Ogata, C. de Vargas, G. Lima-Mendez, J. Raes, J. Poulain, O. Jaillon, P. Wincker, S. Kandels-Lewis, E. Karsenti, P. Bork and S. G. Acinas, Environ Microbiol 16(9): 2659-2671: 2014.
7. Echinophyllia tarae sp. n. (Cnidaria, Anthozoa, Scleractinia), a new reef coral species from the Gambier Islands, French Polynesia
Benzoni, F., Zookeys(318): 59-79: 2013.
6. Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
Swan, B. K., B. Tupper, A. Sczyrba, F. M. Lauro, M. Martinez-Garcia, J. M. Gonzalez, H. Luo, J. J. Wright, Z. C. Landry, N. W. Hanson, B. P. Thompson, N. J. Poulton, P. Schwientek, S. G. Acinas, S. J. Giovannoni, M. A. Moran, S. J. Hallam, R. Cavicchioli, T. Woyke and R. Stepanauskas, Proc Natl Acad Sci U S A 110(28): 11463-11468: 2013.
5. Sequencing platform and library preparation choices impact viral metagenomes
Solonenko, S. A., J. C. Ignacio-Espinoza, A. Alberti, C. Cruaud, S. Hallam, K. Konstantinidis, G. Tyson, P. Wincker and M. B. Sullivan, BMC Genomics 14: 320: 2013.
4. Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses
Brum, J. R., R. O. Schenck and M. B. Sullivan, ISME J 7(9): 1738-1751: 2013.
3. Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
Hingamp, P., N. Grimsley, S. G. Acinas, C. Clerissi, L. Subirana, J. Poulain, I. Ferrera, H. Sarmento, E. Villar, G. Lima-Mendez, K. Faust, S. Sunagawa, J. M. Claverie, H. Moreau, Y. Desdevises, P. Bork, J. Raes, C. de Vargas, E. Karsenti, S. Kandels-Lewis, O. Jaillon, F. Not, S. Pesant, P. Wincker and H. Ogata, ISME J 7(9): 1678-1695: 2013.
2. Phylogenetic analysis of Thecosomata Blainville, 1824 (holoplanktonic opisthobranchia) using morphological and molecular data
Corse, E., J. Rampal, C. Cuoc, N. Pech, Y. Perez and A. Gilles, PLoS One 8(4): e59439: 2013.
1. A holistic approach to marine eco-systems biology
Karsenti, E., S. G. Acinas, P. Bork, C. Bowler, C. De Vargas, J. Raes, M. Sullivan, D. Arendt, F. Benzoni, J. M. Claverie, M. Follows, G. Gorsky, P. Hingamp, D. Iudicone, O. Jaillon, S. Kandels-Lewis, U. Krzic, F. Not, H. Ogata, S. Pesant, E. G. Reynaud, C. Sardet, M. E. Sieracki, S. Speich, D. Velayoudon, J. Weissenbach, P. Wincker and C. Tara Oceans, PLoS Biol 9(10): e1001177.: 2011.