Command line: /nfs/cds-peta/exports/biol_micro_cds_gr_sunagawa/scratch/qingli/conda/anaconda3/envs/de_novo_example/bin/spades.py	-1	/nfs/cds-peta/exports/biol_micro_cds_gr_sunagawa/scratch/qingli/genomics_de_novo_temp/working_dir/BCep_R1_QCd_err_cor.fastq.gz	-2	/nfs/cds-peta/exports/biol_micro_cds_gr_sunagawa/scratch/qingli/genomics_de_novo_temp/working_dir/BCep_R2_QCd_err_cor.fastq.gz	-o	/nfs/cds-peta/exports/biol_micro_cds_gr_sunagawa/scratch/qingli/genomics_de_novo_temp/working_dir/spades_default_assembly	-t	4	--only-assembler	

System information:
  SPAdes version: 3.11.1
  Python version: 3.6.10
  OS: Linux-3.10.0-1160.36.2.el7.x86_64-x86_64-with-redhat-7.9-Maipo

Output dir: /nfs/cds-peta/exports/biol_micro_cds_gr_sunagawa/scratch/qingli/genomics_de_novo_temp/working_dir/spades_default_assembly
Mode: ONLY assembling (without read error correction)
Debug mode is turned OFF

Dataset parameters:
  Multi-cell mode (you should set '--sc' flag if input data was obtained with MDA (single-cell) technology or --meta flag if processing metagenomic dataset)
  Reads:
    Library number: 1, library type: paired-end
      orientation: fr
      left reads: ['/nfs/cds-peta/exports/biol_micro_cds_gr_sunagawa/scratch/qingli/genomics_de_novo_temp/working_dir/BCep_R1_QCd_err_cor.fastq.gz']
      right reads: ['/nfs/cds-peta/exports/biol_micro_cds_gr_sunagawa/scratch/qingli/genomics_de_novo_temp/working_dir/BCep_R2_QCd_err_cor.fastq.gz']
      interlaced reads: not specified
      single reads: not specified
Assembly parameters:
  k: automatic selection based on read length
  Repeat resolution is enabled
  Mismatch careful mode is turned OFF
  MismatchCorrector will be SKIPPED
  Coverage cutoff is turned OFF
Other parameters:
  Dir for temp files: /nfs/cds-peta/exports/biol_micro_cds_gr_sunagawa/scratch/qingli/genomics_de_novo_temp/working_dir/spades_default_assembly/tmp
  Threads: 4
  Memory limit (in Gb): 250