All statistics are based on contigs of size >= 1000 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Assembly spades_default spades_kmers_careful megahit_default megahit_min_count_3 # contigs (>= 0 bp) 288 239 200 198 # contigs (>= 1000 bp) 132 91 156 158 # contigs (>= 5000 bp) 94 74 118 121 # contigs (>= 10000 bp) 87 67 104 108 # contigs (>= 25000 bp) 67 58 72 75 # contigs (>= 50000 bp) 51 43 49 51 Total length (>= 0 bp) 8490011 8510655 8511587 8511217 Total length (>= 1000 bp) 8447218 8472540 8492269 8493797 Total length (>= 5000 bp) 8371775 8438829 8405876 8408960 Total length (>= 10000 bp) 8324069 8384754 8296157 8308919 Total length (>= 25000 bp) 8010950 8245120 7760455 7762256 Total length (>= 50000 bp) 7438644 7723080 6917716 6910273 # contigs 132 91 156 158 Largest contig 754490 961949 539126 539126 Total length 8447218 8472540 8492269 8493797 Reference length 8605945 8605945 8605945 8605945 GC (%) 66.67 66.67 66.66 66.66 Reference GC (%) 66.61 66.61 66.61 66.61 N50 151907 217699 144335 131456 NG50 143914 217699 144335 131456 N75 85907 107910 66469 64244 NG75 79029 98944 64299 62113 L50 16 12 19 20 LG50 17 12 19 20 L75 35 26 40 42 LG75 36 27 41 43 # misassemblies 6 6 9 8 # misassembled contigs 6 6 9 8 Misassembled contigs length 1469048 1719134 1200775 1050989 # local misassemblies 9 8 4 4 # scaffold gap ext. mis. 0 0 0 0 # scaffold gap loc. mis. 0 0 0 0 # unaligned mis. contigs 0 0 0 0 # unaligned contigs 0 + 0 part 0 + 1 part 0 + 0 part 0 + 0 part Unaligned length 0 1317 0 0 Genome fraction (%) 98.140 98.421 98.596 98.605 Duplication ratio 1.000 1.000 1.001 1.001 # N's per 100 kbp 0.00 0.00 0.00 0.00 # mismatches per 100 kbp 3.85 2.72 2.45 2.36 # indels per 100 kbp 0.67 0.45 0.31 0.27 # genomic features 7539 + 75 part 7563 + 62 part 7540 + 105 part 7540 + 104 part Largest alignment 455950 505898 350746 350746 Total aligned length 8436553 8470789 8491768 8493173 NA50 143914 198969 144083 125159 NGA50 143431 198969 144083 125159 NA75 79029 103468 61973 61722 NGA75 78885 98926 61722 57545 LA50 17 13 20 21 LGA50 18 13 20 21 LA75 37 28 42 44 LGA75 38 29 43 45