TrimmomaticPE: Started with arguments:
 B_cepacia_raw_R1.fastq.gz B_cepacia_raw_R2.fastq.gz BCep_R1_paired.fastq.gz BCep_R1_unpaired.fastq.gz BCep_R2_paired.fastq.gz BCep_R2_unpaired.fastq.gz CROP:140 LEADING:10 TRAILING:10 SLIDINGWINDOW:5:20 MINLEN:140 -threads 4
Quality encoding detected as phred33
Input Read Pairs: 4149343 Both Surviving: 1484739 (35.78%) Forward Only Surviving: 638815 (15.40%) Reverse Only Surviving: 877835 (21.16%) Dropped: 1147954 (27.67%)
TrimmomaticPE: Completed successfully