FastQCFastQC Report
Sun 17 Dec 2017
B_cepacia_raw_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameB_cepacia_raw_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4149343
Sequences flagged as poor quality0
Sequence length151
%GC68

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAAGTCA5650.002376911210.2666063
CCTCGGA15950.0097412665.4552061
CAAAAAA17500.00454793645.38636641
Produced by FastQC (version 0.11.5)