Bins that were identified in the single profile database 'B CEP' and stored in the database as "DEFAULT" collection, describe 1 bins accountig for 8,472,540 nucleotides, which represent 99.55% of all nucleotides stored in the contigs database, and 100.00% of nucleotides stored in the profile database.
The single profile database that was generated with the minimum contig length of 1,000 contained 91 contigs, which correspond to 38% of all contigs, and 99% of all nucleotides found in the contigs database.
Profile DB for B CEP w/ 1 samples.
Key Value
Created on 2019-06-13 01:00:40
Version 31
Minimum contig length 1,000
Number of contigs 91
Number of splits 412
Total nucleotides 8.47 Mb
SNVs profiled 1
SCVs profiled 0
Contigs DB
Key Value
Created on 2019-06-13 01:00:40
Version 12
Split length 20,000
Number of contigs 239
Number of splits 560
Total nucleotides 8.51 Mb
K-mer size 4
Genes are called 1
Splits consider gene calls 1
Gene function sources COG_CATEGORY, COG_FUNCTION

No description is provided

Summary of of each bin. You can download the information below also as a TAB-delimited file. Here is another TAB-delimited file that reports data for each single profile (such as number of reads mapped, etc).

Bin Source Taxonomy Total Size Num Contigs N50 GC Content Compl. Red. SCG Domain
 
EVERYTHING UNKNOWN 91 217,699 66.44% 1.44% bacteria

TAB-delimited matrix file for std_coverage: bins_across_samples/std_coverage.txt

Bin B_CEP
 
EVERYTHING 11.69

TAB-delimited matrix file for mean_coverage: bins_across_samples/mean_coverage.txt

Bin B_CEP
 
EVERYTHING 43.65

TAB-delimited matrix file for mean_coverage_Q2Q3: bins_across_samples/mean_coverage_Q2Q3.txt

Bin B_CEP
 
EVERYTHING 43.92

TAB-delimited matrix file for max_normalized_ratio: bins_across_samples/max_normalized_ratio.txt

Bin B_CEP
 
EVERYTHING 1.00

TAB-delimited matrix file for relative_abundance: bins_across_samples/relative_abundance.txt

Bin B_CEP
 
EVERYTHING 1.04

TAB-delimited matrix file for detection: bins_across_samples/detection.txt

Bin B_CEP
 
EVERYTHING 1.00

TAB-delimited matrix file for abundance: bins_across_samples/abundance.txt

Bin B_CEP
 
EVERYTHING 1.04

TAB-delimited matrix file for variability: bins_across_samples/variability.txt

Bin B_CEP
 
EVERYTHING 0.51

This panel shows how much of the mapped data is recruited by each bin (and how much of the mapped data was not binned under 'splits_not_binned' column). The way these percents calculated is quite simple: summarize the mean coverage of each split in each bin, and normalize every bin with respect to each other. It is critical to remember that these values do not take the unasssambled data into account. This is how you should read this table: "X percent of all mapped reads in Sample Y mapped to splits that were binned into bin Z".

TAB-delimited matrix file for percent recruitment: bins_across_samples/bins_percent_recruitment.txt

Sample EVERYTHING __splits_not_binned__
B_CEP 100.00% 0.00%

An overview of genes and functions based on the information found in the contigs database. If you haven't assigned any functions, these tables will only contain coverages of ORFs across samples.

Bin Total Size Num Genes Identified Tabular data
 
EVERYTHING 7,736 🔗 genes | gene_coverages | detection

This panel shows you the result of non-single copy gene hits in your bins and contigs for each HMM profile. Here is a table that shows the total number of HMM hits in each bin for each HMM search type (from bins_across_samples/hmm_hit_totals.txt):

Bin Ribosomal_RNAs
 
EVERYTHING 2

The distribution of each HMM item found in your HMM collections is shown below. Different search types will be presented in their cognate tabs.

HMM hits in bins for Ribosomal_RNAs (from bins_across_samples/hmms_Ribosomal_RNAs.txt):

Bin Archa ... Archa ... Archa ... Archa ... Bacte ... Bacte ... Bacte ... Eukar ... Eukar ... Eukar ... ...
 
EVERYTHING None 1 None None 1 None None None None None ...

Misc Data

For layers

The directory misc data layers contains TAB-delimited files for additional data stored under the following data group names for each sample/layer found in the merged database: default.

The default data group, which often is added by anvi'o automatically and contains important information, contained these keys: total_reads_mapped, num_SNVs_reported.

For items

None found :(