[13 Jun 19 01:00:40] anvio ..............................: 5.5
[13 Jun 19 01:00:40] profiler_version ...................: 31
[13 Jun 19 01:00:40] sample_id ..........................: B_CEP
[13 Jun 19 01:00:40] description ........................: None
[13 Jun 19 01:00:40] profile_db .........................: /home/astrobio/genomics_de_novo_temp/working_dir/B_cep_profiled/PROFILE.db
[13 Jun 19 01:00:40] contigs_db .........................: True
[13 Jun 19 01:00:40] contigs_db_hash ....................: hashaf04828f
[13 Jun 19 01:00:40] cmd_line ...........................: /home/astrobio/miniconda3/envs/de_novo_example/bin/anvi-profile -i B_cep.bam -c contigs.db -M 1000 -T 16 --cluster-contigs -o B_cep_profiled/
[13 Jun 19 01:00:40] merged .............................: False
[13 Jun 19 01:00:40] blank ..............................: False
[13 Jun 19 01:00:40] split_length .......................: 20,000
[13 Jun 19 01:00:40] min_contig_length ..................: 1,000
[13 Jun 19 01:00:40] max_contig_length ..................: 9,223,372,036,854,775,807
[13 Jun 19 01:00:40] min_mean_coverage ..................: 0
[13 Jun 19 01:00:40] clustering_performed ...............: True
[13 Jun 19 01:00:40] min_coverage_for_variability .......: 10
[13 Jun 19 01:00:40] skip_SNV_profiling .................: False
[13 Jun 19 01:00:40] profile_SCVs .......................: False
[13 Jun 19 01:00:40] report_variability_full ............: False
[13 Jun 19 01:00:40] 
WARNING
=====================================
Your minimum contig length is set to 1,000 base pairs. So anvi'o will not take
into consideration anything below that. If you need to kill this an restart your
analysis with another minimum contig length value, feel free to press CTRL+C.


[13 Jun 19 01:00:40] input_bam ..........................: /home/astrobio/genomics_de_novo_temp/working_dir/B_cep.bam
[13 Jun 19 01:00:40] output_dir .........................: /home/astrobio/genomics_de_novo_temp/working_dir/B_cep_profiled
[13 Jun 19 01:00:40] total_reads_mapped .................: 2,958,672
[13 Jun 19 01:00:40] num_contigs ........................: 239
[13 Jun 19 01:00:40] num_contigs_after_M ................: 91
[13 Jun 19 01:00:40] num_contigs ........................: 91
[13 Jun 19 01:00:40] num_splits .........................: 412
[13 Jun 19 01:00:40] total_length .......................: 8,472,540
[13 Jun 19 01:00:40] max_coverage_depth .................: 8,000
[13 Jun 19 01:02:03] 
New data for 'layers' in data group 'default'
=====================================

[13 Jun 19 01:02:03] Data key "total_reads_mapped" ......: Predicted type: int
[13 Jun 19 01:02:03] Data key "num_SNVs_reported" .......: Predicted type: int
[13 Jun 19 01:02:03] 
NEW DATA
=====================================

[13 Jun 19 01:02:03] Database ...........................: profile
[13 Jun 19 01:02:03] Data group .........................: default
[13 Jun 19 01:02:03] Data table .........................: layers
[13 Jun 19 01:02:03] New data keys ......................: total_reads_mapped, num_SNVs_reported.
[13 Jun 19 01:02:03] New items order ....................: "tnf:euclidean:ward" (type newick) has been added to the database...
[13 Jun 19 01:02:04] New items order ....................: "tnf-ab-cov:euclidean:ward" (type newick) has been added to the database...
[13 Jun 19 01:02:04] * Happy 

[13 Jun 19 01:02:04] Bye.