Key | Value |
---|---|
Created on | 2023-10-24 15:39:58 |
Version | 16 |
Number of genes | 33,249 |
Number of gene clusters | 7,873 |
Partial genes excluded | No |
Minbit parameter | 0.5 |
Gene cluster min occurrence parameter | 1 |
MCL inflation parameter | 2.0 |
NCBI blastp or DIAMOND? | DIAMOND |
Additional parameters for sequence search | --masking 0 |
Number of genomes used | 7 |
Items aditional data keys | num_genomes_gene_cluster_has_hits, num_genes_in_gene_cluster, max_num_paralogs, SCG |
Key | Value |
---|---|
Created on | Storage DB knows nothing :( |
Version | 7 |
Number of genomes described | 7 |
Functional annotation | Available |
Functional annotation sources | KEGG_Class, KEGG_Module, KOfam, KEGG_BRITE |
This was a full summary (i.e., the `--quick` flag has not been used), hence the gene clusters summary file is not succint by any means.
The summary file: TRICHODESMIUM_gene_clusters_summary.txt.gz
For layers
The directory misc data layers contains TAB-delimited files for additional data stored under the following data group names for each sample/layer found in the merged database: default.
The default data group, which often is added by anvi'o automatically and contains important information, contained these keys: total_length, gc_content, percent_completion, percent_redundancy, num_genes, avg_gene_length, num_genes_per_kb, singleton_gene_clusters, num_gene_clusters.
For items
The directory misc data items contains TAB-delimited files for additional data stored under the following data group names for each item found in the merged database: default.