The 3 gene cluster 'bins' that were sotred in the anvi'o pan database for 'TRICHODESMIUM' under the collection name "default", describe 7,873 gene clusters with 33,249 genes that were identified in 7 genomes.
Here are some of the details about the pan database, and genomes storage.
Pan DB for TRICHODESMIUM w/ 7 samples.
Key Value
Created on 2023-10-24 15:39:58
Version 16
Number of genes 33,249
Number of gene clusters 7,873
Partial genes excluded No
Minbit parameter 0.5
Gene cluster min occurrence parameter 1
MCL inflation parameter 2.0
NCBI blastp or DIAMOND? DIAMOND
Additional parameters for sequence search --masking 0
Number of genomes used 7
Items aditional data keys num_genomes_gene_cluster_has_hits, num_genes_in_gene_cluster, max_num_paralogs, SCG
Genomes storage
Key Value
Created on Storage DB knows nothing :(
Version 7
Number of genomes described 7
Functional annotation Available
Functional annotation sources KEGG_Class, KEGG_Module, KOfam, KEGG_BRITE
These are the list of genomes used in this pan database: MAG_Candidatus_Trichodesmium_miru, MAG_Candidatus_Trichodesmium_nobis, MAG_Trichodesmium_erythraeum, MAG_Trichodesmium_thiebautii_Atlantic, MAG_Trichodesmium_thiebautii_Indian, Trichodesmium_erythraeum_IMS101, Trichodesmium_thiebautii_H9_4

Summary files for gene clusters

This was a full summary (i.e., the `--quick` flag has not been used), hence the gene clusters summary file is not succint by any means.

The summary file: TRICHODESMIUM_gene_clusters_summary.txt.gz

Misc Data

For layers

The directory misc data layers contains TAB-delimited files for additional data stored under the following data group names for each sample/layer found in the merged database: default.

The default data group, which often is added by anvi'o automatically and contains important information, contained these keys: total_length, gc_content, percent_completion, percent_redundancy, num_genes, avg_gene_length, num_genes_per_kb, singleton_gene_clusters, num_gene_clusters.

For items

The directory misc data items contains TAB-delimited files for additional data stored under the following data group names for each item found in the merged database: default.