# self

key: samples
value:
total_length, num_contigs, N50, GC_content, percent_completion, percent_redundancy, nifB, nifD, nifE, nifH, nifK, nifN


# item_orders

name: Bacteria_71_TREE:unknown:unknown
type: newick
additional: "{\"collapsedNodes\":[]}"
data:
(Prochlorococcus:0.24529,(((((TARA_SAMEA2732857_MAG_00000008:0.000832847,MAG_Candidatus_Trichodesmium_miru:0.0015253)1:0.0300753,(MAG_Candidatus_Trichodesmium_nobis:0.0154548,TARA_SAMEA5997311_MAG_00000004:0.0171828)1:0.0071982)1:0.0205226,(SOGI22-1_SAMEA6126158_MAG_00000007:0.0544406,(CHAS20-1_SAMN14350222_MAG_00000035:0.0416364,CHAS20-1_SAMN14350225_MAG_00000010:0.0259283)1:0.0146935)1:0.0329577)0.121:0.00825148,(TARA_SAMEA5997434_MAG_00000006:0.0019338,(MAG_Trichodesmium_thiebautii_Atlantic:0.00394081,(Trichodesmium_thiebautii_H9-4:0.00126091,(MAG_Trichodesmium_thiebautii_Indian:0.00797879,TARA_SAMEA2731434_MAG_00000007:0.00644488)1:0.00343052)1:0.00361352)0:0.00504097)1:0.0440858)1:0.0195445,(((Trichodesmium_erythraeum_IMS101:5e-09,LEEM17-1_SAMN05368345_MAG_00000004:5e-09)1:0.000659851,MAG_Trichodesmium_erythraeum:0.000844013)1:0.00355335,TARA_SAMEA5997252_MAG_00000008:0.00343285)1:0.025446)1:0.24529)0:0;


# states

name: default
last_modified: 03.03.2024 17:19:10
content:
{
    "version": "3",
    "tree-type": "circlephylogram",
    "order-by": "Bacteria_71_TREE:unknown:unknown",
    "current-view": "single",
    "angle-min": "0",
    "angle-max": "270",
    "tree-radius": "2560",
    "tree-height": "0",
    "tree-width": "0",
    "layer-margin": "15",
    "outer-ring-height": "100",
    "outer-ring-margin": "50",
    "edge-normalization": true,
    "custom-layer-margin": true,
    "show-grid-for-bins": true,
    "show-shade-for-bins": true,
    "shade-fill-opacity": "0.1",
    "invert-shade-for-bins": false,
    "inverse-fill-opacity": "0.1",
    "inverse-color": "#000",
    "grid-color": "#ffffff",
    "grid-width": "5",
    "samples-order": "custom",
    "max-font-size": "60",
    "optimize-speed": true,
    "show-bin-labels": true,
    "begins-from-branch": false,
    "bin-labels-font-size": "150",
    "autorotate-bin-labels": true,
    "estimate-taxonomy": false,
    "bin-labels-angle": "0",
    "background-opacity": "0.15",
    "max-font-size-label": "150",
    "draw-guide-lines": "no",
    "state-name": "default",
    "show-support-values": false,
    "support-range-low": "0",
    "support-range-high": "100",
    "support-display-symbol": false,
    "support-symbol-invert": false,
    "support-display-number": false,
    "support-symbol-size": "12",
    "support-symbol-color": "#AA0000",
    "support-font-size": "24",
    "support-text-rotation": "0",
    "layer-order": [
        "total_length",
        "num_contigs",
        "N50",
        "GC_content",
        "percent_completion",
        "percent_redundancy",
        "nifB",
        "nifD",
        "nifE",
        "nifH",
        "nifK",
        "nifN"
    ],
    "categorical_data_colors": {},
    "stack_bar_colors": {},
    "layers": {
        "total_length": {
            "color": "#000000",
            "height": "200",
            "margin": "15",
            "type": "bar",
            "color-start": "#FFFFFF"
        },
        "num_contigs": {
            "color": "#000000",
            "height": "0",
            "margin": "15",
            "type": "bar",
            "color-start": "#FFFFFF"
        },
        "N50": {
            "color": "#000000",
            "height": "200",
            "margin": "15",
            "type": "bar",
            "color-start": "#FFFFFF"
        },
        "GC_content": {
            "color": "#000000",
            "height": "0",
            "margin": "15",
            "type": "bar",
            "color-start": "#FFFFFF"
        },
        "percent_completion": {
            "color": "#4e7a45",
            "height": "200",
            "margin": "15",
            "type": "bar",
            "color-start": "#FFFFFF"
        },
        "percent_redundancy": {
            "color": "#8f4343",
            "height": "200",
            "margin": "15",
            "type": "bar",
            "color-start": "#FFFFFF"
        },
        "nifB": {
            "color": "#000000",
            "height": "150",
            "margin": "200",
            "type": "bar",
            "color-start": "#FFFFFF"
        },
        "nifD": {
            "color": "#000000",
            "height": "150",
            "margin": "15",
            "type": "bar",
            "color-start": "#FFFFFF"
        },
        "nifE": {
            "color": "#000000",
            "height": "150",
            "margin": "15",
            "type": "bar",
            "color-start": "#FFFFFF"
        },
        "nifH": {
            "color": "#000000",
            "height": "150",
            "margin": "15",
            "type": "bar",
            "color-start": "#FFFFFF"
        },
        "nifK": {
            "color": "#000000",
            "height": "150",
            "margin": "15",
            "type": "bar",
            "color-start": "#FFFFFF"
        },
        "nifN": {
            "color": "#000000",
            "height": "150",
            "margin": "15",
            "type": "bar",
            "color-start": "#FFFFFF"
        }
    },
    "views": {
        "single": {
            "total_length": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "10077817",
                    "disabled": false
                }
            },
            "num_contigs": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "1431",
                    "disabled": false
                }
            },
            "N50": {
                "normalization": "log",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "6.889307810605101",
                    "disabled": false
                }
            },
            "GC_content": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "36.75839985580636",
                    "disabled": false
                }
            },
            "percent_completion": {
                "normalization": "none",
                "min": {
                    "value": "50",
                    "disabled": false
                },
                "max": {
                    "value": "100",
                    "disabled": false
                }
            },
            "percent_redundancy": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "10",
                    "disabled": false
                }
            },
            "nifB": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "1",
                    "disabled": false
                }
            },
            "nifD": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "1",
                    "disabled": false
                }
            },
            "nifE": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "1",
                    "disabled": false
                }
            },
            "nifH": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "1",
                    "disabled": false
                }
            },
            "nifK": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "1",
                    "disabled": false
                }
            },
            "nifN": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "1",
                    "disabled": false
                }
            }
        }
    },
    "samples-categorical-colors": {},
    "samples-stack-bar-colors": {},
    "samples-edge-length-normalization": true,
    "samples-ignore-branch-length": false,
    "samples-tree-height": "400",
    "samples-layer-order": [],
    "samples-layers": {},
    "samples-groups": {}
}


