In this folder you will find the hybrid nanopore/illumina genome reconstructed for the E.coli strain MOD1-EC898, which encodes for the origamin BGC

The genome contains 5 scaffolds, as follows:
Escherichia-coli-strain-MOD1-EC898-chromosome-circular --> complete chromosome assembled with nanopore and polished with illumina
Escherichia-coli-strain-MOD1-EC898-plasmid-circular --> complete plasmid assembled with nanopore and polished with illumina
Escherichia-coli-strain-MOD1-EC898-scaffold_1 --> fragment (?) from a small plasmid (?) recovered only by illumina
Escherichia-coli-strain-MOD1-EC898-scaffold_2 --> fragment (?) from a small plasmid (?) recovered only by illumina --> this is the one that contains the Origamin BGC
Escherichia-coli-strain-MOD1-EC898-scaffold_3 --> fragment (?) from a phage recovered only by illumina
Escherichia-coli-strain-MOD1-EC898-scaffold_4 --> fragment (?) from a small plasmid (?) recovered only by illumina
Escherichia-coli-strain-MOD1-EC898-scaffold_5 --> fragment (?) from a small plasmid (?) recovered only by illumina



- genome sequence: MEIC23-Escherichia-coli-strain-MOD1-EC898-origamin.fasta
- genes (nucleotides): MEIC23-Escherichia-coli-strain-MOD1-EC898-origamin.fna
- genes (proteins): MEIC23-Escherichia-coli-strain-MOD1-EC898-origamin.faa
- antismash annotations: MEIC23-Escherichia-coli-strain-MOD1-EC898-origamin-antismash
- eggnog annotations: MEIC23-Escherichia-coli-strain-MOD1-EC898-origamin-eggnog.tsv
- blastp against origamin proteins: MEIC23-Escherichia-coli-strain-MOD1-EC898-vs-origamin-proteins.blast.tsv