Summary of what I did:
- I used GTDB-Tk to get the taxonomic annotations of the prokaryotic MAGs (GTDB-Tk v2.3.0 and GTDB r214) --> HGP-MAGs-GTDB-summary.tsv 
- I then used the GTDB-Tk gene calls to run defense-finder on the prokaryotic MAGs (defensefinder v1.0.9) --> HGP-MAGs-defensefinder-summary.tsv 
- I also ran the gene calls on the viral MAGs (with prodigal v2.6.3, options -c -m -g 11 -p meta) to run defense-finder (v1.0.9) on those as well --> HGP-vMAGs-defensefinder-summary.tsv