TARA_SAMEA6036876_MAG_00000002 - 30 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

TARA_SAMEA6036876_MAG_00000002-scaffold_2

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	terpene	1	14,248
Region 2.2	RiPP-like,T1PKS,transAT-PKS	50,150	140,074

TARA_SAMEA6036876_MAG_00000002-scaffold_3

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	T1PKS,NRPS,NRPS-like	9	100,987

TARA_SAMEA6036876_MAG_00000002-scaffold_4

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RRE-containing	13,322	35,583

TARA_SAMEA6036876_MAG_00000002-scaffold_6

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	terpene	89,541	106,460

TARA_SAMEA6036876_MAG_00000002-scaffold_17

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	thiopeptide,thioamitides	1	27,324

TARA_SAMEA6036876_MAG_00000002-scaffold_20

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	cyanobactin	1	30,044

TARA_SAMEA6036876_MAG_00000002-scaffold_24

Region	Type	From	To	Most similar known cluster		Similarity
Region 24.1	cyanobactin	27,967	48,188

TARA_SAMEA6036876_MAG_00000002-scaffold_34

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	NRPS-like,T1PKS	12,915	52,620

TARA_SAMEA6036876_MAG_00000002-scaffold_37

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	NRPS,T1PKS	1	52,415

TARA_SAMEA6036876_MAG_00000002-scaffold_39

Region	Type	From	To	Most similar known cluster		Similarity
Region 39.1	cyanobactin	23,460	45,586

TARA_SAMEA6036876_MAG_00000002-scaffold_40

Region	Type	From	To	Most similar known cluster		Similarity
Region 40.1	NRPS,T1PKS	12,891	50,850

TARA_SAMEA6036876_MAG_00000002-scaffold_43

Region	Type	From	To	Most similar known cluster		Similarity
Region 43.1	RRE-containing,RiPP-like	1	27,764

TARA_SAMEA6036876_MAG_00000002-scaffold_51

Region	Type	From	To	Most similar known cluster		Similarity
Region 51.1	RRE-containing	23,398	45,310

TARA_SAMEA6036876_MAG_00000002-scaffold_58

Region	Type	From	To	Most similar known cluster		Similarity
Region 58.1	terpene	10,998	32,947

TARA_SAMEA6036876_MAG_00000002-scaffold_62

Region	Type	From	To	Most similar known cluster		Similarity
Region 62.1	RRE-containing	1,962	22,315

TARA_SAMEA6036876_MAG_00000002-scaffold_64

Region	Type	From	To	Most similar known cluster		Similarity
Region 64.1	microviridin	2,160	22,462

TARA_SAMEA6036876_MAG_00000002-scaffold_78

Region	Type	From	To	Most similar known cluster		Similarity
Region 78.1	hglE-KS	1	31,693

TARA_SAMEA6036876_MAG_00000002-scaffold_102

Region	Type	From	To	Most similar known cluster		Similarity
Region 102.1	thioamitides	1	21,791

TARA_SAMEA6036876_MAG_00000002-scaffold_110

Region	Type	From	To	Most similar known cluster		Similarity
Region 110.1	T1PKS	1	21,561

TARA_SAMEA6036876_MAG_00000002-scaffold_117

Region	Type	From	To	Most similar known cluster		Similarity
Region 117.1	NRPS	1	20,489

TARA_SAMEA6036876_MAG_00000002-scaffold_131

Region	Type	From	To	Most similar known cluster		Similarity
Region 131.1	T1PKS	1	18,400

TARA_SAMEA6036876_MAG_00000002-scaffold_136

Region	Type	From	To	Most similar known cluster		Similarity
Region 136.1	resorcinol	1	17,803

TARA_SAMEA6036876_MAG_00000002-scaffold_143

Region	Type	From	To	Most similar known cluster		Similarity
Region 143.1	NRPS	1	16,488

TARA_SAMEA6036876_MAG_00000002-scaffold_150

Region	Type	From	To	Most similar known cluster		Similarity
Region 150.1	T3PKS	1	15,673

TARA_SAMEA6036876_MAG_00000002-scaffold_168

Region	Type	From	To	Most similar known cluster		Similarity
Region 168.1	LAP	1	13,362

TARA_SAMEA6036876_MAG_00000002-scaffold_171

Region	Type	From	To	Most similar known cluster		Similarity
Region 171.1	NRPS	1	13,138

TARA_SAMEA6036876_MAG_00000002-scaffold_172

Region	Type	From	To	Most similar known cluster		Similarity
Region 172.1	proteusin,RiPP-like	2,354	13,115

TARA_SAMEA6036876_MAG_00000002-scaffold_193

Region	Type	From	To	Most similar known cluster		Similarity
Region 193.1	terpene	1	10,724

TARA_SAMEA6036876_MAG_00000002-scaffold_224

Region	Type	From	To	Most similar known cluster		Similarity
Region 224.1	RRE-containing	1	6,856

Region	Type	From	To	Similarity
Region 2.1	terpene	1	14,248
Region 2.2	RiPP-like,T1PKS,transAT-PKS	50,150	140,074
Region 3.1	T1PKS,NRPS,NRPS-like	9	100,987
Region 4.1	RRE-containing	13,322	35,583
Region 6.1	terpene	89,541	106,460
Region 17.1	thiopeptide,thioamitides	1	27,324
Region 20.1	cyanobactin	1	30,044
Region 24.1	cyanobactin	27,967	48,188
Region 34.1	NRPS-like,T1PKS	12,915	52,620
Region 37.1	NRPS,T1PKS	1	52,415
Region 39.1	cyanobactin	23,460	45,586
Region 40.1	NRPS,T1PKS	12,891	50,850
Region 43.1	RRE-containing,RiPP-like	1	27,764
Region 51.1	RRE-containing	23,398	45,310
Region 58.1	terpene	10,998	32,947
Region 62.1	RRE-containing	1,962	22,315
Region 64.1	microviridin	2,160	22,462
Region 78.1	hglE-KS	1	31,693
Region 102.1	thioamitides	1	21,791
Region 110.1	T1PKS	1	21,561
Region 117.1	NRPS	1	20,489
Region 131.1	T1PKS	1	18,400
Region 136.1	resorcinol	1	17,803
Region 143.1	NRPS	1	16,488
Region 150.1	T3PKS	1	15,673
Region 168.1	LAP	1	13,362
Region 171.1	NRPS	1	13,138
Region 172.1	proteusin,RiPP-like	2,354	13,115
Region 193.1	terpene	1	10,724
Region 224.1	RRE-containing	1	6,856

No secondary metabolite regions were found in these records:: TARA_SAMEA6036876_MAG_00000002-scaffold_1; TARA_SAMEA6036876_MAG_00000002-scaffold_5; TARA_SAMEA6036876_MAG_00000002-scaffold_7; TARA_SAMEA6036876_MAG_00000002-scaffold_8; TARA_SAMEA6036876_MAG_00000002-scaffold_9; TARA_SAMEA6036876_MAG_00000002-scaffold_10; TARA_SAMEA6036876_MAG_00000002-scaffold_11; TARA_SAMEA6036876_MAG_00000002-scaffold_12; TARA_SAMEA6036876_MAG_00000002-scaffold_13; TARA_SAMEA6036876_MAG_00000002-scaffold_14; TARA_SAMEA6036876_MAG_00000002-scaffold_15; TARA_SAMEA6036876_MAG_00000002-scaffold_16; TARA_SAMEA6036876_MAG_00000002-scaffold_18; TARA_SAMEA6036876_MAG_00000002-scaffold_19; TARA_SAMEA6036876_MAG_00000002-scaffold_21; TARA_SAMEA6036876_MAG_00000002-scaffold_22; TARA_SAMEA6036876_MAG_00000002-scaffold_23; TARA_SAMEA6036876_MAG_00000002-scaffold_25; TARA_SAMEA6036876_MAG_00000002-scaffold_26; TARA_SAMEA6036876_MAG_00000002-scaffold_27; TARA_SAMEA6036876_MAG_00000002-scaffold_28; TARA_SAMEA6036876_MAG_00000002-scaffold_29; TARA_SAMEA6036876_MAG_00000002-scaffold_30; TARA_SAMEA6036876_MAG_00000002-scaffold_31; TARA_SAMEA6036876_MAG_00000002-scaffold_32; TARA_SAMEA6036876_MAG_00000002-scaffold_33; TARA_SAMEA6036876_MAG_00000002-scaffold_35; TARA_SAMEA6036876_MAG_00000002-scaffold_36; TARA_SAMEA6036876_MAG_00000002-scaffold_38; TARA_SAMEA6036876_MAG_00000002-scaffold_41; TARA_SAMEA6036876_MAG_00000002-scaffold_42; TARA_SAMEA6036876_MAG_00000002-scaffold_44; TARA_SAMEA6036876_MAG_00000002-scaffold_45; TARA_SAMEA6036876_MAG_00000002-scaffold_46; TARA_SAMEA6036876_MAG_00000002-scaffold_47; TARA_SAMEA6036876_MAG_00000002-scaffold_48; TARA_SAMEA6036876_MAG_00000002-scaffold_49; TARA_SAMEA6036876_MAG_00000002-scaffold_50; TARA_SAMEA6036876_MAG_00000002-scaffold_52; TARA_SAMEA6036876_MAG_00000002-scaffold_53; TARA_SAMEA6036876_MAG_00000002-scaffold_54; TARA_SAMEA6036876_MAG_00000002-scaffold_55; TARA_SAMEA6036876_MAG_00000002-scaffold_56; TARA_SAMEA6036876_MAG_00000002-scaffold_57; TARA_SAMEA6036876_MAG_00000002-scaffold_59; TARA_SAMEA6036876_MAG_00000002-scaffold_60; TARA_SAMEA6036876_MAG_00000002-scaffold_61; TARA_SAMEA6036876_MAG_00000002-scaffold_63; TARA_SAMEA6036876_MAG_00000002-scaffold_65; TARA_SAMEA6036876_MAG_00000002-scaffold_66; TARA_SAMEA6036876_MAG_00000002-scaffold_67; TARA_SAMEA6036876_MAG_00000002-scaffold_68; TARA_SAMEA6036876_MAG_00000002-scaffold_69; TARA_SAMEA6036876_MAG_00000002-scaffold_70; TARA_SAMEA6036876_MAG_00000002-scaffold_71; TARA_SAMEA6036876_MAG_00000002-scaffold_72; TARA_SAMEA6036876_MAG_00000002-scaffold_73; TARA_SAMEA6036876_MAG_00000002-scaffold_74; TARA_SAMEA6036876_MAG_00000002-scaffold_75; TARA_SAMEA6036876_MAG_00000002-scaffold_76; TARA_SAMEA6036876_MAG_00000002-scaffold_77; TARA_SAMEA6036876_MAG_00000002-scaffold_79; TARA_SAMEA6036876_MAG_00000002-scaffold_80; TARA_SAMEA6036876_MAG_00000002-scaffold_81; TARA_SAMEA6036876_MAG_00000002-scaffold_82; TARA_SAMEA6036876_MAG_00000002-scaffold_83; TARA_SAMEA6036876_MAG_00000002-scaffold_84; TARA_SAMEA6036876_MAG_00000002-scaffold_85; TARA_SAMEA6036876_MAG_00000002-scaffold_86; TARA_SAMEA6036876_MAG_00000002-scaffold_87; TARA_SAMEA6036876_MAG_00000002-scaffold_88; TARA_SAMEA6036876_MAG_00000002-scaffold_89; TARA_SAMEA6036876_MAG_00000002-scaffold_90; TARA_SAMEA6036876_MAG_00000002-scaffold_91; TARA_SAMEA6036876_MAG_00000002-scaffold_92; TARA_SAMEA6036876_MAG_00000002-scaffold_93; TARA_SAMEA6036876_MAG_00000002-scaffold_94; TARA_SAMEA6036876_MAG_00000002-scaffold_95; TARA_SAMEA6036876_MAG_00000002-scaffold_96; TARA_SAMEA6036876_MAG_00000002-scaffold_97; TARA_SAMEA6036876_MAG_00000002-scaffold_98; TARA_SAMEA6036876_MAG_00000002-scaffold_99; TARA_SAMEA6036876_MAG_00000002-scaffold_100; TARA_SAMEA6036876_MAG_00000002-scaffold_101; TARA_SAMEA6036876_MAG_00000002-scaffold_103; TARA_SAMEA6036876_MAG_00000002-scaffold_104; TARA_SAMEA6036876_MAG_00000002-scaffold_105; TARA_SAMEA6036876_MAG_00000002-scaffold_106; TARA_SAMEA6036876_MAG_00000002-scaffold_107; TARA_SAMEA6036876_MAG_00000002-scaffold_108; TARA_SAMEA6036876_MAG_00000002-scaffold_109; TARA_SAMEA6036876_MAG_00000002-scaffold_111; TARA_SAMEA6036876_MAG_00000002-scaffold_112; TARA_SAMEA6036876_MAG_00000002-scaffold_113; TARA_SAMEA6036876_MAG_00000002-scaffold_114; TARA_SAMEA6036876_MAG_00000002-scaffold_115; TARA_SAMEA6036876_MAG_00000002-scaffold_116; TARA_SAMEA6036876_MAG_00000002-scaffold_118; TARA_SAMEA6036876_MAG_00000002-scaffold_119; TARA_SAMEA6036876_MAG_00000002-scaffold_120; TARA_SAMEA6036876_MAG_00000002-scaffold_121; TARA_SAMEA6036876_MAG_00000002-scaffold_122; TARA_SAMEA6036876_MAG_00000002-scaffold_123; TARA_SAMEA6036876_MAG_00000002-scaffold_124; TARA_SAMEA6036876_MAG_00000002-scaffold_125; TARA_SAMEA6036876_MAG_00000002-scaffold_126; TARA_SAMEA6036876_MAG_00000002-scaffold_127; TARA_SAMEA6036876_MAG_00000002-scaffold_128; TARA_SAMEA6036876_MAG_00000002-scaffold_129; TARA_SAMEA6036876_MAG_00000002-scaffold_130; TARA_SAMEA6036876_MAG_00000002-scaffold_132; TARA_SAMEA6036876_MAG_00000002-scaffold_133; TARA_SAMEA6036876_MAG_00000002-scaffold_134; TARA_SAMEA6036876_MAG_00000002-scaffold_135; TARA_SAMEA6036876_MAG_00000002-scaffold_137; TARA_SAMEA6036876_MAG_00000002-scaffold_138; TARA_SAMEA6036876_MAG_00000002-scaffold_139; TARA_SAMEA6036876_MAG_00000002-scaffold_140; TARA_SAMEA6036876_MAG_00000002-scaffold_141; TARA_SAMEA6036876_MAG_00000002-scaffold_142; TARA_SAMEA6036876_MAG_00000002-scaffold_144; TARA_SAMEA6036876_MAG_00000002-scaffold_145; TARA_SAMEA6036876_MAG_00000002-scaffold_146; TARA_SAMEA6036876_MAG_00000002-scaffold_147; TARA_SAMEA6036876_MAG_00000002-scaffold_148; TARA_SAMEA6036876_MAG_00000002-scaffold_149; TARA_SAMEA6036876_MAG_00000002-scaffold_151; TARA_SAMEA6036876_MAG_00000002-scaffold_152; TARA_SAMEA6036876_MAG_00000002-scaffold_153; TARA_SAMEA6036876_MAG_00000002-scaffold_154; TARA_SAMEA6036876_MAG_00000002-scaffold_155; TARA_SAMEA6036876_MAG_00000002-scaffold_156; TARA_SAMEA6036876_MAG_00000002-scaffold_157; TARA_SAMEA6036876_MAG_00000002-scaffold_158; TARA_SAMEA6036876_MAG_00000002-scaffold_159; TARA_SAMEA6036876_MAG_00000002-scaffold_160; TARA_SAMEA6036876_MAG_00000002-scaffold_161; TARA_SAMEA6036876_MAG_00000002-scaffold_162; TARA_SAMEA6036876_MAG_00000002-scaffold_163; TARA_SAMEA6036876_MAG_00000002-scaffold_164; TARA_SAMEA6036876_MAG_00000002-scaffold_165; TARA_SAMEA6036876_MAG_00000002-scaffold_166; TARA_SAMEA6036876_MAG_00000002-scaffold_167; TARA_SAMEA6036876_MAG_00000002-scaffold_169; TARA_SAMEA6036876_MAG_00000002-scaffold_170; TARA_SAMEA6036876_MAG_00000002-scaffold_173; TARA_SAMEA6036876_MAG_00000002-scaffold_174; TARA_SAMEA6036876_MAG_00000002-scaffold_175; TARA_SAMEA6036876_MAG_00000002-scaffold_176; TARA_SAMEA6036876_MAG_00000002-scaffold_177; TARA_SAMEA6036876_MAG_00000002-scaffold_178; TARA_SAMEA6036876_MAG_00000002-scaffold_179; TARA_SAMEA6036876_MAG_00000002-scaffold_180; TARA_SAMEA6036876_MAG_00000002-scaffold_181; TARA_SAMEA6036876_MAG_00000002-scaffold_182; TARA_SAMEA6036876_MAG_00000002-scaffold_183; TARA_SAMEA6036876_MAG_00000002-scaffold_184; TARA_SAMEA6036876_MAG_00000002-scaffold_185; TARA_SAMEA6036876_MAG_00000002-scaffold_186; TARA_SAMEA6036876_MAG_00000002-scaffold_187; TARA_SAMEA6036876_MAG_00000002-scaffold_188; TARA_SAMEA6036876_MAG_00000002-scaffold_189; TARA_SAMEA6036876_MAG_00000002-scaffold_190; TARA_SAMEA6036876_MAG_00000002-scaffold_191; TARA_SAMEA6036876_MAG_00000002-scaffold_192; TARA_SAMEA6036876_MAG_00000002-scaffold_194; TARA_SAMEA6036876_MAG_00000002-scaffold_195; TARA_SAMEA6036876_MAG_00000002-scaffold_196; TARA_SAMEA6036876_MAG_00000002-scaffold_197; TARA_SAMEA6036876_MAG_00000002-scaffold_198; TARA_SAMEA6036876_MAG_00000002-scaffold_199; TARA_SAMEA6036876_MAG_00000002-scaffold_200; TARA_SAMEA6036876_MAG_00000002-scaffold_201; TARA_SAMEA6036876_MAG_00000002-scaffold_202; TARA_SAMEA6036876_MAG_00000002-scaffold_203; TARA_SAMEA6036876_MAG_00000002-scaffold_204; TARA_SAMEA6036876_MAG_00000002-scaffold_205; TARA_SAMEA6036876_MAG_00000002-scaffold_206; TARA_SAMEA6036876_MAG_00000002-scaffold_207; TARA_SAMEA6036876_MAG_00000002-scaffold_208; TARA_SAMEA6036876_MAG_00000002-scaffold_209; TARA_SAMEA6036876_MAG_00000002-scaffold_210; TARA_SAMEA6036876_MAG_00000002-scaffold_211; TARA_SAMEA6036876_MAG_00000002-scaffold_212; TARA_SAMEA6036876_MAG_00000002-scaffold_213; TARA_SAMEA6036876_MAG_00000002-scaffold_214; TARA_SAMEA6036876_MAG_00000002-scaffold_215; TARA_SAMEA6036876_MAG_00000002-scaffold_216; TARA_SAMEA6036876_MAG_00000002-scaffold_217; TARA_SAMEA6036876_MAG_00000002-scaffold_218; TARA_SAMEA6036876_MAG_00000002-scaffold_219; TARA_SAMEA6036876_MAG_00000002-scaffold_220; TARA_SAMEA6036876_MAG_00000002-scaffold_221; TARA_SAMEA6036876_MAG_00000002-scaffold_222; TARA_SAMEA6036876_MAG_00000002-scaffold_223; TARA_SAMEA6036876_MAG_00000002-scaffold_225; TARA_SAMEA6036876_MAG_00000002-scaffold_226; TARA_SAMEA6036876_MAG_00000002-scaffold_227; TARA_SAMEA6036876_MAG_00000002-scaffold_228; TARA_SAMEA6036876_MAG_00000002-scaffold_229; TARA_SAMEA6036876_MAG_00000002-scaffold_230; TARA_SAMEA6036876_MAG_00000002-scaffold_231; TARA_SAMEA6036876_MAG_00000002-scaffold_232; TARA_SAMEA6036876_MAG_00000002-scaffold_233; TARA_SAMEA6036876_MAG_00000002-scaffold_234; TARA_SAMEA6036876_MAG_00000002-scaffold_235; TARA_SAMEA6036876_MAG_00000002-scaffold_236; TARA_SAMEA6036876_MAG_00000002-scaffold_237; TARA_SAMEA6036876_MAG_00000002-scaffold_238

Compact view

TARA_SAMEA6036876_MAG_00000002-scaffold_2 - Region 1 - terpene

Download region GenBank file

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Location: 1 - 14,248 nt. (total: 14,248 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

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Gene details

Select a gene to view the details available for it

TARA_SAMEA6036876_MAG_00000002-scaffold_2 - Region 2 - RiPP-like,T1PKS,transAT-PKS

Download region GenBank file

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Location: 50,150 - 140,074 nt. (total: 89,925 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
transAT-PKS: (cds(PKS_AT and not (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)) and (cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)) or cds(tra_KS and PP-binding)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 50149 - 140074:

Rough prediction of core scaffold based on assumed PKS linker matching; tailoring reactions not taken into account

Polymer prediction:: (ohmal - redmal) + (ohmal) + (ohmal - Me-mal - ohmal) + (Me-ccmal - mal - mal) + (ohmal - Me-mal - ohmal) + (Me-ccmal - mal - mal)
Non-colinear ordering:: TARA_SAMEA6036876_MAG_00000002-scaffold_2_64 + TARA_SAMEA6036876_MAG_00000002-scaffold_2_65 + TARA_SAMEA6036876_MAG_00000002-scaffold_2_68 + TARA_SAMEA6036876_MAG_00000002-scaffold_2_69 + TARA_SAMEA6036876_MAG_00000002-scaffold_2_67 + TARA_SAMEA6036876_MAG_00000002-scaffold_2_68 + TARA_SAMEA6036876_MAG_00000002-scaffold_2_69

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 4, location 53275 - 140074:

Rough prediction of core scaffold based on assumed PKS linker matching; tailoring reactions not taken into account

Polymer prediction:: (ohmal - redmal) + (ohmal) + (ohmal - Me-mal - ohmal) + (Me-ccmal - mal - mal) + (ohmal - Me-mal - ohmal) + (Me-ccmal - mal - mal)
Non-colinear ordering:: TARA_SAMEA6036876_MAG_00000002-scaffold_2_64 + TARA_SAMEA6036876_MAG_00000002-scaffold_2_65 + TARA_SAMEA6036876_MAG_00000002-scaffold_2_68 + TARA_SAMEA6036876_MAG_00000002-scaffold_2_69 + TARA_SAMEA6036876_MAG_00000002-scaffold_2_67 + TARA_SAMEA6036876_MAG_00000002-scaffold_2_68 + TARA_SAMEA6036876_MAG_00000002-scaffold_2_69

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036876_MAG_00000002-scaffold_2_64

PKS_AT (567..862): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 95.8%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 203.0
inactive: 163.5
Methoxymalonyl-CoA: 65.8
Methylmalonyl-CoA: 57.3
Isobutyryl-CoA: 43.7
Propionyl-CoA: 39.8
trans-1,2-CPDA: 28.3
2-Methylbutyryl-CoA: 26.1
Benzoyl-CoA: 23.0
Acetyl-CoA: 22.0
Ethylmalonyl-CoA: 16.8
CHC-CoA: 16.7
fatty_acid: 10.1
3-Methylbutyryl-CoA: 10.1

PKS_AT (2138..2433): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 100.0%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 208.9
inactive: 168.9
Methoxymalonyl-CoA: 69.3
Methylmalonyl-CoA: 62.2
Isobutyryl-CoA: 46.2
Propionyl-CoA: 42.6
trans-1,2-CPDA: 30.4
2-Methylbutyryl-CoA: 26.3
Benzoyl-CoA: 24.2
Acetyl-CoA: 22.5
Ethylmalonyl-CoA: 18.9
CHC-CoA: 17.8
fatty_acid: 10.1
3-Methylbutyryl-CoA: 10.1

TARA_SAMEA6036876_MAG_00000002-scaffold_2_65

PKS_AT (211..495): mal

ATSignature: (unknown)

No matches above 50%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 91.8
inactive: 85.6
Propionyl-CoA: 27.1
Methoxymalonyl-CoA: 22.4
Methylmalonyl-CoA: 16.2
Benzoyl-CoA: 16.0
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

PKS_AT (1087..1382): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 83.3%; inactive: 83.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 171.5
inactive: 146.4
Methoxymalonyl-CoA: 63.5
Methylmalonyl-CoA: 54.0
Propionyl-CoA: 42.7
2-Methylbutyryl-CoA: 23.3
Isobutyryl-CoA: 22.0
Ethylmalonyl-CoA: 21.9
Benzoyl-CoA: 20.9
CHC-CoA: 19.0
Acetyl-CoA: 18.5
trans-1,2-CPDA: 15.7
3-Methylbutyryl-CoA: 8.4
fatty_acid: 0.0

TARA_SAMEA6036876_MAG_00000002-scaffold_2_67

PKS_AT (5..282): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 79.2%; inactive: 62.5%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 109.3
inactive: 39.5
Methoxymalonyl-CoA: 37.1
Methylmalonyl-CoA: 30.7
fatty_acid: 25.5
Propionyl-CoA: 24.0
trans-1,2-CPDA: 11.8
2-Methylbutyryl-CoA: 11.0
Ethylmalonyl-CoA: 10.3
CHC-CoA: 9.5
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
Isobutyryl-CoA: -3.4

TARA_SAMEA6036876_MAG_00000002-scaffold_2_68

PKS_AT (569..863): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 87.5%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 204.1
inactive: 178.0
Methoxymalonyl-CoA: 61.2
Methylmalonyl-CoA: 46.5
Isobutyryl-CoA: 35.1
Propionyl-CoA: 30.1
Benzoyl-CoA: 28.9
Acetyl-CoA: 24.1
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

TARA_SAMEA6036876_MAG_00000002-scaffold_3 - Region 1 - NRPS,NRPS-like,T1PKS

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Location: 9 - 100,987 nt. (total: 100,979 nt) Show pHMM detection rules used

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: cds(Condensation and (AMP-binding or A-OX))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

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Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 8 - 100987:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (redmal) + (OMe-ohmal) + (Me-ohmal) + (redmal) + (Me-ccmal - NMe-tyr)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 21836 - 100987:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (redmal) + (OMe-ohmal) + (Me-ohmal) + (redmal) + (Me-ccmal - NMe-tyr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036876_MAG_00000002-scaffold_3_15

CAL_domain (38..484): pk

minowa: fatty_acid

Prediction, score:

fatty_acid: 34.5
NH2: 25.2
AHBA: 9.6
shikimic_acid: 3.1
Acetyl-CoA: 1.0

TARA_SAMEA6036876_MAG_00000002-scaffold_3_39

Search NORINE for peptide: strict or relaxed

PKS_AT (567..861): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 91.7%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 181.1
inactive: 159.0
Methoxymalonyl-CoA: 58.6
Methylmalonyl-CoA: 51.5
Isobutyryl-CoA: 27.0
Propionyl-CoA: 23.0
Benzoyl-CoA: 17.2
Ethylmalonyl-CoA: 16.6
Acetyl-CoA: 14.6
CHC-CoA: 13.1
2-Methylbutyryl-CoA: 11.4
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
3-Methylbutyryl-CoA: 0.0

AMP-binding (2710..3100): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DASTIAAVCK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6036876_MAG_00000002-scaffold_3_40

PKS_AT (569..864): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 83.3%; inactive: 79.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 182.0
inactive: 149.4
Methoxymalonyl-CoA: 53.7
Methylmalonyl-CoA: 45.1
Isobutyryl-CoA: 26.3
Acetyl-CoA: 23.5
Propionyl-CoA: 23.4
Benzoyl-CoA: 19.3
Ethylmalonyl-CoA: 15.8
trans-1,2-CPDA: 10.8
2-Methylbutyryl-CoA: 9.8
fatty_acid: 0.0
CHC-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

TARA_SAMEA6036876_MAG_00000002-scaffold_3_41

PKS_AT (565..859): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 83.3%; inactive: 83.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 188.1
inactive: 160.4
Methoxymalonyl-CoA: 60.7
Methylmalonyl-CoA: 45.8
Isobutyryl-CoA: 23.1
Propionyl-CoA: 20.7
Benzoyl-CoA: 19.3
CHC-CoA: 13.1
Acetyl-CoA: 13.0
Ethylmalonyl-CoA: 11.9
2-Methylbutyryl-CoA: 11.7
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
3-Methylbutyryl-CoA: 0.0

TARA_SAMEA6036876_MAG_00000002-scaffold_3_42

PKS_AT (555..849): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 91.7%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 186.0
inactive: 156.4
Methoxymalonyl-CoA: 48.9
Methylmalonyl-CoA: 38.6
Isobutyryl-CoA: 22.2
Propionyl-CoA: 21.5
CHC-CoA: 15.5
2-Methylbutyryl-CoA: 13.7
trans-1,2-CPDA: 11.9
Benzoyl-CoA: 11.5
Ethylmalonyl-CoA: 9.6
fatty_acid: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

TARA_SAMEA6036876_MAG_00000002-scaffold_3_43

CAL_domain (186..478): pk

minowa: Acetyl-CoA

Prediction, score:

Acetyl-CoA: 13.3
AHBA: 8.5
shikimic_acid: 0.0
fatty_acid: 0.0
NH2: 0.0

PKS_AT (1245..1538): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 91.7%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 198.7
inactive: 160.9
Methoxymalonyl-CoA: 50.5
Methylmalonyl-CoA: 48.5
Isobutyryl-CoA: 27.9
Propionyl-CoA: 26.8
Benzoyl-CoA: 17.1
Acetyl-CoA: 13.0
Ethylmalonyl-CoA: 12.4
2-Methylbutyryl-CoA: 12.4
trans-1,2-CPDA: 10.9
CHC-CoA: 9.5
3-Methylbutyryl-CoA: 7.9
fatty_acid: 0.0

TARA_SAMEA6036876_MAG_00000002-scaffold_4 - Region 1 - RRE-containing

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Location: 13,322 - 35,583 nt. (total: 22,262 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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TARA_SAMEA6036876_MAG_00000002-scaffold_6 - Region 1 - terpene

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Location: 89,541 - 106,460 nt. (total: 16,920 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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TARA_SAMEA6036876_MAG_00000002-scaffold_17 - Region 1 - thioamitides,thiopeptide

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Location: 1 - 27,324 nt. (total: 27,324 nt) Show pHMM detection rules used

Region on contig edge.

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)
thioamitides: ((YcaO or TIGR03882) and TfuA)

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Thiopeptides

Thiopeptide predictions

No core peptides found.

Thiopeptides

Core peptide predictions

No core peptides found.

TARA_SAMEA6036876_MAG_00000002-scaffold_20 - Region 1 - cyanobactin

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Location: 1 - 30,044 nt. (total: 30,044 nt) Show pHMM detection rules used

Region on contig edge.

cyanobactin: (cyanobactin_synth or TIGR03678)

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TARA_SAMEA6036876_MAG_00000002-scaffold_24 - Region 1 - cyanobactin

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Location: 27,967 - 48,188 nt. (total: 20,222 nt) Show pHMM detection rules used

cyanobactin: (cyanobactin_synth or TIGR03678)

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TARA_SAMEA6036876_MAG_00000002-scaffold_34 - Region 1 - NRPS-like,T1PKS

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Location: 12,915 - 52,620 nt. (total: 39,706 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 12914 - 52620:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 17520 - 52620:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036876_MAG_00000002-scaffold_34_21

CAL_domain (370..662): pk

minowa: NH2

Prediction, score:

NH2: 38.9
fatty_acid: 7.8
shikimic_acid: 0.0
Acetyl-CoA: 0.0
AHBA: 0.0

TARA_SAMEA6036876_MAG_00000002-scaffold_34_22

PKS_AT (547..843): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 87.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 188.6
inactive: 152.8
Methoxymalonyl-CoA: 67.5
Methylmalonyl-CoA: 67.4
Propionyl-CoA: 46.7
Ethylmalonyl-CoA: 36.6
Benzoyl-CoA: 33.6
2-Methylbutyryl-CoA: 29.5
Isobutyryl-CoA: 27.5
CHC-CoA: 22.3
Acetyl-CoA: 20.4
trans-1,2-CPDA: 18.8
fatty_acid: 9.3
3-Methylbutyryl-CoA: 0.0

TARA_SAMEA6036876_MAG_00000002-scaffold_37 - Region 1 - NRPS,T1PKS

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Location: 1 - 52,415 nt. (total: 52,415 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 52415:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (asn) + (ohmal - ser) + (X) + (D-ohmal) + (gly) + (asn) + (NMe-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036876_MAG_00000002-scaffold_37_1

CAL_domain (181..509): pk

minowa: NH2

Prediction, score:

NH2: 156.0
Acetyl-CoA: 53.4
AHBA: 25.3
fatty_acid: 15.2
shikimic_acid: 8.8

TARA_SAMEA6036876_MAG_00000002-scaffold_37_3

Search NORINE for peptide: strict or relaxed

AMP-binding (466..867): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6036876_MAG_00000002-scaffold_37_5

Search NORINE for peptide: strict or relaxed

PKS_AT (538..824): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 87.5%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 166.7
inactive: 119.2
Methoxymalonyl-CoA: 59.8
Methylmalonyl-CoA: 52.3
Isobutyryl-CoA: 39.4
Benzoyl-CoA: 35.0
Propionyl-CoA: 29.3
Ethylmalonyl-CoA: 26.2
fatty_acid: 22.3
CHC-CoA: 21.9
2-Methylbutyryl-CoA: 20.5
Acetyl-CoA: 17.3
3-Methylbutyryl-CoA: 10.1
trans-1,2-CPDA: 0.0

AMP-binding (1974..2374): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6036876_MAG_00000002-scaffold_37_7

Search NORINE for peptide: strict or relaxed

AMP-binding (459..853): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

TARA_SAMEA6036876_MAG_00000002-scaffold_37_8

PKS_AT (541..826): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 83.3%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 181.5
inactive: 129.5
Methoxymalonyl-CoA: 65.7
Methylmalonyl-CoA: 52.9
Propionyl-CoA: 39.0
Isobutyryl-CoA: 37.6
Benzoyl-CoA: 27.2
Ethylmalonyl-CoA: 21.3
Acetyl-CoA: 15.9
fatty_acid: 15.7
2-Methylbutyryl-CoA: 12.6
CHC-CoA: 12.0
trans-1,2-CPDA: 0.0
3-Methylbutyryl-CoA: 0.0

TARA_SAMEA6036876_MAG_00000002-scaffold_37_9

Search NORINE for peptide: strict or relaxed

AMP-binding (471..874): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGilWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 80% (moderate)

TARA_SAMEA6036876_MAG_00000002-scaffold_37_10

Search NORINE for peptide: strict or relaxed

AMP-binding (466..882): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DaTKIGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

TARA_SAMEA6036876_MAG_00000002-scaffold_37_11

Search NORINE for peptide: strict or relaxed

AMP-binding (517..922): X

NRPSPredictor2: phe, trp, phg, tyr, bht

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAlFvGGiCK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 70% (weak)

TARA_SAMEA6036876_MAG_00000002-scaffold_39 - Region 1 - cyanobactin

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Location: 23,460 - 45,586 nt. (total: 22,127 nt) Show pHMM detection rules used

cyanobactin: (cyanobactin_synth or TIGR03678)

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TARA_SAMEA6036876_MAG_00000002-scaffold_40 - Region 1 - NRPS,T1PKS

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Location: 12,891 - 50,850 nt. (total: 37,960 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 12890 - 50850:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Me-redmal - Me-cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036876_MAG_00000002-scaffold_40_28

Search NORINE for peptide: strict or relaxed

PKS_AT (574..873): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 83.3%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 191.5
inactive: 186.3
Methoxymalonyl-CoA: 69.0
Methylmalonyl-CoA: 63.7
Propionyl-CoA: 42.8
Isobutyryl-CoA: 34.7
Ethylmalonyl-CoA: 32.7
2-Methylbutyryl-CoA: 25.4
Benzoyl-CoA: 22.4
trans-1,2-CPDA: 21.0
Acetyl-CoA: 18.2
CHC-CoA: 16.6
3-Methylbutyryl-CoA: 3.0
fatty_acid: 0.0

AMP-binding (3069..3471): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6036876_MAG_00000002-scaffold_43 - Region 1 - RRE-containing,RiPP-like

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Location: 1 - 27,764 nt. (total: 27,764 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

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TARA_SAMEA6036876_MAG_00000002-scaffold_51 - Region 1 - RRE-containing

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Location: 23,398 - 45,310 nt. (total: 21,913 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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TARA_SAMEA6036876_MAG_00000002-scaffold_58 - Region 1 - terpene

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Location: 10,998 - 32,947 nt. (total: 21,950 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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TARA_SAMEA6036876_MAG_00000002-scaffold_62 - Region 1 - RRE-containing

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Location: 1,962 - 22,315 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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TARA_SAMEA6036876_MAG_00000002-scaffold_64 - Region 1 - microviridin

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Location: 2,160 - 22,462 nt. (total: 20,303 nt) Show pHMM detection rules used

microviridin: (mvd or mvnA)

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TARA_SAMEA6036876_MAG_00000002-scaffold_78 - Region 1 - hglE-KS

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Location: 1 - 31,693 nt. (total: 31,693 nt) Show pHMM detection rules used

Region on contig edge.

hglE-KS: (hglE or hglD)

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

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NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 31693:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036876_MAG_00000002-scaffold_78_5

PKS_AT (1324..1622): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 70.8%; inactive: 62.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 84.1
inactive: 32.7
Methylmalonyl-CoA: 26.1
fatty_acid: 24.7
Methoxymalonyl-CoA: 23.8
Isobutyryl-CoA: 18.4
CHC-CoA: 16.8
Benzoyl-CoA: 10.0
Propionyl-CoA: 8.3
trans-1,2-CPDA: 0.0
Ethylmalonyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

TARA_SAMEA6036876_MAG_00000002-scaffold_78_7

PKS_AT (586..810): pk

ATSignature: (unknown)

No matches above 50%

minowa: trans-1,2-CPDA

Prediction, score:

trans-1,2-CPDA: 0.0
inactive: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Methylmalonyl-CoA: 0.0
Methoxymalonyl-CoA: 0.0
Malonyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

TARA_SAMEA6036876_MAG_00000002-scaffold_102 - Region 1 - thioamitides

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Location: 1 - 21,791 nt. (total: 21,791 nt) Show pHMM detection rules used

Region on contig edge.

thioamitides: ((YcaO or TIGR03882) and TfuA)

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TARA_SAMEA6036876_MAG_00000002-scaffold_110 - Region 1 - T1PKS

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Location: 1 - 21,561 nt. (total: 21,561 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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NRPS/PKS domains

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TARA_SAMEA6036876_MAG_00000002-scaffold_117 - Region 1 - NRPS

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Location: 1 - 20,489 nt. (total: 20,489 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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TARA_SAMEA6036876_MAG_00000002-scaffold_131 - Region 1 - T1PKS

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Location: 1 - 18,400 nt. (total: 18,400 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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Predicted core structure(s)

For candidate cluster 1, location 0 - 18400:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036876_MAG_00000002-scaffold_131_4

CAL_domain (150..485): pk

minowa: NH2

Prediction, score:

NH2: 142.7
Acetyl-CoA: 52.7
fatty_acid: 27.3
AHBA: 26.4
shikimic_acid: 19.6

TARA_SAMEA6036876_MAG_00000002-scaffold_131_7

PKS_AT (531..739): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 58.3%; inactive: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 66.9
inactive: 64.9
Methylmalonyl-CoA: 27.6
2-Methylbutyryl-CoA: 24.7
Methoxymalonyl-CoA: 22.2
Propionyl-CoA: 21.5
CHC-CoA: 21.5
trans-1,2-CPDA: 19.6
Ethylmalonyl-CoA: 14.9
Isobutyryl-CoA: 14.8
Benzoyl-CoA: 12.4
Acetyl-CoA: 10.4
3-Methylbutyryl-CoA: 7.6
fatty_acid: 0.0

TARA_SAMEA6036876_MAG_00000002-scaffold_136 - Region 1 - resorcinol

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Location: 1 - 17,803 nt. (total: 17,803 nt) Show pHMM detection rules used

Region on contig edge.

resorcinol: DarB

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TARA_SAMEA6036876_MAG_00000002-scaffold_143 - Region 1 - NRPS

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Location: 1 - 16,488 nt. (total: 16,488 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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Predicted core structure(s)

For candidate cluster 1, location 0 - 16488:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (NMe-ala-b)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036876_MAG_00000002-scaffold_143_2

Search NORINE for peptide: strict or relaxed

AMP-binding (501..913): ala-b

NRPSPredictor2: ala-b

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: phe, trp
Single AA prediction:: phe

Stachelhaus prediction details:

Stachelhaus sequence:: VDWVISfAnK
Nearest Stachelhaus code:: ala-b
Stachelhaus code match:: 80% (moderate)

TARA_SAMEA6036876_MAG_00000002-scaffold_143_5

Search NORINE for peptide: strict or relaxed

AMP-binding (512..904): X

NRPSPredictor2: tyr, bht

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAsAIgeVCK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

TARA_SAMEA6036876_MAG_00000002-scaffold_150 - Region 1 - T3PKS

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Location: 1 - 15,673 nt. (total: 15,673 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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TARA_SAMEA6036876_MAG_00000002-scaffold_168 - Region 1 - LAP

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Location: 1 - 13,362 nt. (total: 13,362 nt) Show pHMM detection rules used

Region on contig edge.

LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882 or TIGR03604)) or TIGR03603 or TIGR03602) and not cyanobactin_synth)

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TARA_SAMEA6036876_MAG_00000002-scaffold_171 - Region 1 - NRPS

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Location: 1 - 13,138 nt. (total: 13,138 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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Predicted core structure(s)

For candidate cluster 1, location 0 - 13138:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (tyr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036876_MAG_00000002-scaffold_171_5

Search NORINE for peptide: strict or relaxed

CAL_domain (53..495): pk

minowa: NH2

Prediction, score:

NH2: 191.2
fatty_acid: 30.9
AHBA: 7.2
Acetyl-CoA: 2.3
shikimic_acid: 0.0

AMP-binding (1171..1564): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DASiVAAVCK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 90% (moderate)

TARA_SAMEA6036876_MAG_00000002-scaffold_172 - Region 1 - RiPP-like,proteusin

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Location: 2,354 - 13,115 nt. (total: 10,762 nt) Show pHMM detection rules used

Region on contig edge.

proteusin: (PoyD or TIGR03793)
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

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TARA_SAMEA6036876_MAG_00000002-scaffold_193 - Region 1 - terpene

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Location: 1 - 10,724 nt. (total: 10,724 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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TARA_SAMEA6036876_MAG_00000002-scaffold_224 - Region 1 - RRE-containing

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Location: 1 - 6,856 nt. (total: 6,856 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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