TARA_SAMEA6036341_MAG_00000029 - 33 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

TARA_SAMEA6036341_MAG_00000029-scaffold_1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	NRPS,T1PKS	1	58,829

TARA_SAMEA6036341_MAG_00000029-scaffold_5

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	LAP	93,677	118,721

TARA_SAMEA6036341_MAG_00000029-scaffold_10

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	proteusin,RiPP-like	5,890	26,408

TARA_SAMEA6036341_MAG_00000029-scaffold_12

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	thiopeptide	1	27,292

TARA_SAMEA6036341_MAG_00000029-scaffold_17

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	RiPP-like	23,101	35,116

TARA_SAMEA6036341_MAG_00000029-scaffold_19

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	lassopeptide,RRE-containing	15,193	39,518

TARA_SAMEA6036341_MAG_00000029-scaffold_20

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	RRE-containing,hglE-KS	35,711	69,031

TARA_SAMEA6036341_MAG_00000029-scaffold_24

Region	Type	From	To	Most similar known cluster		Similarity
Region 24.1	cyanobactin	32,118	54,253

TARA_SAMEA6036341_MAG_00000029-scaffold_25

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	NRPS,T1PKS	1	61,358

TARA_SAMEA6036341_MAG_00000029-scaffold_34

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	RRE-containing	25,390	45,743

TARA_SAMEA6036341_MAG_00000029-scaffold_36

Region	Type	From	To	Most similar known cluster		Similarity
Region 36.1	terpene	3,013	23,822

TARA_SAMEA6036341_MAG_00000029-scaffold_38

Region	Type	From	To	Most similar known cluster		Similarity
Region 38.1	RRE-containing	24,269	46,530

TARA_SAMEA6036341_MAG_00000029-scaffold_44

Region	Type	From	To	Most similar known cluster		Similarity
Region 44.1	T1PKS,NRPS	1	36,493

TARA_SAMEA6036341_MAG_00000029-scaffold_58

Region	Type	From	To	Most similar known cluster		Similarity
Region 58.1	T1PKS,NRPS,NRPS-like	1	40,928

TARA_SAMEA6036341_MAG_00000029-scaffold_68

Region	Type	From	To	Most similar known cluster		Similarity
Region 68.1	T3PKS	1	37,197

TARA_SAMEA6036341_MAG_00000029-scaffold_69

Region	Type	From	To	Most similar known cluster		Similarity
Region 69.1	T1PKS,NRPS	1	37,196

TARA_SAMEA6036341_MAG_00000029-scaffold_73

Region	Type	From	To	Most similar known cluster		Similarity
Region 73.1	transAT-PKS-like	7,299	36,426

TARA_SAMEA6036341_MAG_00000029-scaffold_85

Region	Type	From	To	Most similar known cluster		Similarity
Region 85.1	thioamitides	1	23,133

TARA_SAMEA6036341_MAG_00000029-scaffold_88

Region	Type	From	To	Most similar known cluster		Similarity
Region 88.1	thiopeptide,thioamitides	1	31,540

TARA_SAMEA6036341_MAG_00000029-scaffold_90

Region	Type	From	To	Most similar known cluster		Similarity
Region 90.1	cyanobactin	4,641	31,101

TARA_SAMEA6036341_MAG_00000029-scaffold_91

Region	Type	From	To	Most similar known cluster		Similarity
Region 91.1	resorcinol	1	31,070

TARA_SAMEA6036341_MAG_00000029-scaffold_93

Region	Type	From	To	Most similar known cluster		Similarity
Region 93.1	NRPS-like,T1PKS	874	30,460

TARA_SAMEA6036341_MAG_00000029-scaffold_105

Region	Type	From	To	Most similar known cluster		Similarity
Region 105.1	NRPS,T1PKS	1	26,814

TARA_SAMEA6036341_MAG_00000029-scaffold_111

Region	Type	From	To	Most similar known cluster		Similarity
Region 111.1	NRPS	1	25,122

TARA_SAMEA6036341_MAG_00000029-scaffold_113

Region	Type	From	To	Most similar known cluster		Similarity
Region 113.1	T1PKS	1	24,858

TARA_SAMEA6036341_MAG_00000029-scaffold_116

Region	Type	From	To	Most similar known cluster		Similarity
Region 116.1	terpene	4,439	24,248

TARA_SAMEA6036341_MAG_00000029-scaffold_122

Region	Type	From	To	Most similar known cluster		Similarity
Region 122.1	NRPS-like,T1PKS	1	22,586

TARA_SAMEA6036341_MAG_00000029-scaffold_134

Region	Type	From	To	Most similar known cluster		Similarity
Region 134.1	RiPP-like	5,734	16,612

TARA_SAMEA6036341_MAG_00000029-scaffold_136

Region	Type	From	To	Most similar known cluster		Similarity
Region 136.1	terpene	1	17,750

TARA_SAMEA6036341_MAG_00000029-scaffold_141

Region	Type	From	To	Most similar known cluster		Similarity
Region 141.1	T1PKS	1	18,260

TARA_SAMEA6036341_MAG_00000029-scaffold_181

Region	Type	From	To	Most similar known cluster		Similarity
Region 181.1	NRPS-like	1	12,334

TARA_SAMEA6036341_MAG_00000029-scaffold_197

Region	Type	From	To	Most similar known cluster		Similarity
Region 197.1	terpene	1	10,109

TARA_SAMEA6036341_MAG_00000029-scaffold_202

Region	Type	From	To	Most similar known cluster		Similarity
Region 202.1	microviridin	1	8,689

Region	Type	From	To	Similarity
Region 1.1	NRPS,T1PKS	1	58,829
Region 5.1	LAP	93,677	118,721
Region 10.1	proteusin,RiPP-like	5,890	26,408
Region 12.1	thiopeptide	1	27,292
Region 17.1	RiPP-like	23,101	35,116
Region 19.1	lassopeptide,RRE-containing	15,193	39,518
Region 20.1	RRE-containing,hglE-KS	35,711	69,031
Region 24.1	cyanobactin	32,118	54,253
Region 25.1	NRPS,T1PKS	1	61,358
Region 34.1	RRE-containing	25,390	45,743
Region 36.1	terpene	3,013	23,822
Region 38.1	RRE-containing	24,269	46,530
Region 44.1	T1PKS,NRPS	1	36,493
Region 58.1	T1PKS,NRPS,NRPS-like	1	40,928
Region 68.1	T3PKS	1	37,197
Region 69.1	T1PKS,NRPS	1	37,196
Region 73.1	transAT-PKS-like	7,299	36,426
Region 85.1	thioamitides	1	23,133
Region 88.1	thiopeptide,thioamitides	1	31,540
Region 90.1	cyanobactin	4,641	31,101
Region 91.1	resorcinol	1	31,070
Region 93.1	NRPS-like,T1PKS	874	30,460
Region 105.1	NRPS,T1PKS	1	26,814
Region 111.1	NRPS	1	25,122
Region 113.1	T1PKS	1	24,858
Region 116.1	terpene	4,439	24,248
Region 122.1	NRPS-like,T1PKS	1	22,586
Region 134.1	RiPP-like	5,734	16,612
Region 136.1	terpene	1	17,750
Region 141.1	T1PKS	1	18,260
Region 181.1	NRPS-like	1	12,334
Region 197.1	terpene	1	10,109
Region 202.1	microviridin	1	8,689

No secondary metabolite regions were found in these records:: TARA_SAMEA6036341_MAG_00000029-scaffold_2; TARA_SAMEA6036341_MAG_00000029-scaffold_3; TARA_SAMEA6036341_MAG_00000029-scaffold_4; TARA_SAMEA6036341_MAG_00000029-scaffold_6; TARA_SAMEA6036341_MAG_00000029-scaffold_7; TARA_SAMEA6036341_MAG_00000029-scaffold_8; TARA_SAMEA6036341_MAG_00000029-scaffold_9; TARA_SAMEA6036341_MAG_00000029-scaffold_11; TARA_SAMEA6036341_MAG_00000029-scaffold_13; TARA_SAMEA6036341_MAG_00000029-scaffold_14; TARA_SAMEA6036341_MAG_00000029-scaffold_15; TARA_SAMEA6036341_MAG_00000029-scaffold_16; TARA_SAMEA6036341_MAG_00000029-scaffold_18; TARA_SAMEA6036341_MAG_00000029-scaffold_21; TARA_SAMEA6036341_MAG_00000029-scaffold_22; TARA_SAMEA6036341_MAG_00000029-scaffold_23; TARA_SAMEA6036341_MAG_00000029-scaffold_26; TARA_SAMEA6036341_MAG_00000029-scaffold_27; TARA_SAMEA6036341_MAG_00000029-scaffold_28; TARA_SAMEA6036341_MAG_00000029-scaffold_29; TARA_SAMEA6036341_MAG_00000029-scaffold_30; TARA_SAMEA6036341_MAG_00000029-scaffold_31; TARA_SAMEA6036341_MAG_00000029-scaffold_32; TARA_SAMEA6036341_MAG_00000029-scaffold_33; TARA_SAMEA6036341_MAG_00000029-scaffold_35; TARA_SAMEA6036341_MAG_00000029-scaffold_37; TARA_SAMEA6036341_MAG_00000029-scaffold_39; TARA_SAMEA6036341_MAG_00000029-scaffold_40; TARA_SAMEA6036341_MAG_00000029-scaffold_41; TARA_SAMEA6036341_MAG_00000029-scaffold_42; TARA_SAMEA6036341_MAG_00000029-scaffold_43; TARA_SAMEA6036341_MAG_00000029-scaffold_45; TARA_SAMEA6036341_MAG_00000029-scaffold_46; TARA_SAMEA6036341_MAG_00000029-scaffold_47; TARA_SAMEA6036341_MAG_00000029-scaffold_48; TARA_SAMEA6036341_MAG_00000029-scaffold_49; TARA_SAMEA6036341_MAG_00000029-scaffold_50; TARA_SAMEA6036341_MAG_00000029-scaffold_51; TARA_SAMEA6036341_MAG_00000029-scaffold_52; TARA_SAMEA6036341_MAG_00000029-scaffold_53; TARA_SAMEA6036341_MAG_00000029-scaffold_54; TARA_SAMEA6036341_MAG_00000029-scaffold_55; TARA_SAMEA6036341_MAG_00000029-scaffold_56; TARA_SAMEA6036341_MAG_00000029-scaffold_57; TARA_SAMEA6036341_MAG_00000029-scaffold_59; TARA_SAMEA6036341_MAG_00000029-scaffold_60; TARA_SAMEA6036341_MAG_00000029-scaffold_61; TARA_SAMEA6036341_MAG_00000029-scaffold_62; TARA_SAMEA6036341_MAG_00000029-scaffold_63; TARA_SAMEA6036341_MAG_00000029-scaffold_64; TARA_SAMEA6036341_MAG_00000029-scaffold_65; TARA_SAMEA6036341_MAG_00000029-scaffold_66; TARA_SAMEA6036341_MAG_00000029-scaffold_67; TARA_SAMEA6036341_MAG_00000029-scaffold_70; TARA_SAMEA6036341_MAG_00000029-scaffold_71; TARA_SAMEA6036341_MAG_00000029-scaffold_72; TARA_SAMEA6036341_MAG_00000029-scaffold_74; TARA_SAMEA6036341_MAG_00000029-scaffold_75; TARA_SAMEA6036341_MAG_00000029-scaffold_76; TARA_SAMEA6036341_MAG_00000029-scaffold_77; TARA_SAMEA6036341_MAG_00000029-scaffold_78; TARA_SAMEA6036341_MAG_00000029-scaffold_79; TARA_SAMEA6036341_MAG_00000029-scaffold_80; TARA_SAMEA6036341_MAG_00000029-scaffold_81; TARA_SAMEA6036341_MAG_00000029-scaffold_82; TARA_SAMEA6036341_MAG_00000029-scaffold_83; TARA_SAMEA6036341_MAG_00000029-scaffold_84; TARA_SAMEA6036341_MAG_00000029-scaffold_86; TARA_SAMEA6036341_MAG_00000029-scaffold_87; TARA_SAMEA6036341_MAG_00000029-scaffold_89; TARA_SAMEA6036341_MAG_00000029-scaffold_92; TARA_SAMEA6036341_MAG_00000029-scaffold_94; TARA_SAMEA6036341_MAG_00000029-scaffold_95; TARA_SAMEA6036341_MAG_00000029-scaffold_96; TARA_SAMEA6036341_MAG_00000029-scaffold_97; TARA_SAMEA6036341_MAG_00000029-scaffold_98; TARA_SAMEA6036341_MAG_00000029-scaffold_99; TARA_SAMEA6036341_MAG_00000029-scaffold_100; TARA_SAMEA6036341_MAG_00000029-scaffold_101; TARA_SAMEA6036341_MAG_00000029-scaffold_102; TARA_SAMEA6036341_MAG_00000029-scaffold_103; TARA_SAMEA6036341_MAG_00000029-scaffold_104; TARA_SAMEA6036341_MAG_00000029-scaffold_106; TARA_SAMEA6036341_MAG_00000029-scaffold_107; TARA_SAMEA6036341_MAG_00000029-scaffold_108; TARA_SAMEA6036341_MAG_00000029-scaffold_109; TARA_SAMEA6036341_MAG_00000029-scaffold_110; TARA_SAMEA6036341_MAG_00000029-scaffold_112; TARA_SAMEA6036341_MAG_00000029-scaffold_114; TARA_SAMEA6036341_MAG_00000029-scaffold_115; TARA_SAMEA6036341_MAG_00000029-scaffold_117; TARA_SAMEA6036341_MAG_00000029-scaffold_118; TARA_SAMEA6036341_MAG_00000029-scaffold_119; TARA_SAMEA6036341_MAG_00000029-scaffold_120; TARA_SAMEA6036341_MAG_00000029-scaffold_121; TARA_SAMEA6036341_MAG_00000029-scaffold_123; TARA_SAMEA6036341_MAG_00000029-scaffold_124; TARA_SAMEA6036341_MAG_00000029-scaffold_125; TARA_SAMEA6036341_MAG_00000029-scaffold_126; TARA_SAMEA6036341_MAG_00000029-scaffold_127; TARA_SAMEA6036341_MAG_00000029-scaffold_128; TARA_SAMEA6036341_MAG_00000029-scaffold_129; TARA_SAMEA6036341_MAG_00000029-scaffold_130; TARA_SAMEA6036341_MAG_00000029-scaffold_131; TARA_SAMEA6036341_MAG_00000029-scaffold_132; TARA_SAMEA6036341_MAG_00000029-scaffold_133; TARA_SAMEA6036341_MAG_00000029-scaffold_135; TARA_SAMEA6036341_MAG_00000029-scaffold_137; TARA_SAMEA6036341_MAG_00000029-scaffold_138; TARA_SAMEA6036341_MAG_00000029-scaffold_139; TARA_SAMEA6036341_MAG_00000029-scaffold_140; TARA_SAMEA6036341_MAG_00000029-scaffold_142; TARA_SAMEA6036341_MAG_00000029-scaffold_143; TARA_SAMEA6036341_MAG_00000029-scaffold_144; TARA_SAMEA6036341_MAG_00000029-scaffold_145; TARA_SAMEA6036341_MAG_00000029-scaffold_146; TARA_SAMEA6036341_MAG_00000029-scaffold_147; TARA_SAMEA6036341_MAG_00000029-scaffold_148; TARA_SAMEA6036341_MAG_00000029-scaffold_149; TARA_SAMEA6036341_MAG_00000029-scaffold_150; TARA_SAMEA6036341_MAG_00000029-scaffold_151; TARA_SAMEA6036341_MAG_00000029-scaffold_152; TARA_SAMEA6036341_MAG_00000029-scaffold_153; TARA_SAMEA6036341_MAG_00000029-scaffold_154; TARA_SAMEA6036341_MAG_00000029-scaffold_155; TARA_SAMEA6036341_MAG_00000029-scaffold_156; TARA_SAMEA6036341_MAG_00000029-scaffold_157; TARA_SAMEA6036341_MAG_00000029-scaffold_158; TARA_SAMEA6036341_MAG_00000029-scaffold_159; TARA_SAMEA6036341_MAG_00000029-scaffold_160; TARA_SAMEA6036341_MAG_00000029-scaffold_161; TARA_SAMEA6036341_MAG_00000029-scaffold_162; TARA_SAMEA6036341_MAG_00000029-scaffold_163; TARA_SAMEA6036341_MAG_00000029-scaffold_164; TARA_SAMEA6036341_MAG_00000029-scaffold_165; TARA_SAMEA6036341_MAG_00000029-scaffold_166; TARA_SAMEA6036341_MAG_00000029-scaffold_167; TARA_SAMEA6036341_MAG_00000029-scaffold_168; TARA_SAMEA6036341_MAG_00000029-scaffold_169; TARA_SAMEA6036341_MAG_00000029-scaffold_170; TARA_SAMEA6036341_MAG_00000029-scaffold_171; TARA_SAMEA6036341_MAG_00000029-scaffold_172; TARA_SAMEA6036341_MAG_00000029-scaffold_173; TARA_SAMEA6036341_MAG_00000029-scaffold_174; TARA_SAMEA6036341_MAG_00000029-scaffold_175; TARA_SAMEA6036341_MAG_00000029-scaffold_176; TARA_SAMEA6036341_MAG_00000029-scaffold_177; TARA_SAMEA6036341_MAG_00000029-scaffold_178; TARA_SAMEA6036341_MAG_00000029-scaffold_179; TARA_SAMEA6036341_MAG_00000029-scaffold_180; TARA_SAMEA6036341_MAG_00000029-scaffold_182; TARA_SAMEA6036341_MAG_00000029-scaffold_183; TARA_SAMEA6036341_MAG_00000029-scaffold_184; TARA_SAMEA6036341_MAG_00000029-scaffold_185; TARA_SAMEA6036341_MAG_00000029-scaffold_186; TARA_SAMEA6036341_MAG_00000029-scaffold_187; TARA_SAMEA6036341_MAG_00000029-scaffold_188; TARA_SAMEA6036341_MAG_00000029-scaffold_189; TARA_SAMEA6036341_MAG_00000029-scaffold_190; TARA_SAMEA6036341_MAG_00000029-scaffold_191; TARA_SAMEA6036341_MAG_00000029-scaffold_192; TARA_SAMEA6036341_MAG_00000029-scaffold_193; TARA_SAMEA6036341_MAG_00000029-scaffold_194; TARA_SAMEA6036341_MAG_00000029-scaffold_195; TARA_SAMEA6036341_MAG_00000029-scaffold_196; TARA_SAMEA6036341_MAG_00000029-scaffold_198; TARA_SAMEA6036341_MAG_00000029-scaffold_199; TARA_SAMEA6036341_MAG_00000029-scaffold_200; TARA_SAMEA6036341_MAG_00000029-scaffold_201; TARA_SAMEA6036341_MAG_00000029-scaffold_203; TARA_SAMEA6036341_MAG_00000029-scaffold_204; TARA_SAMEA6036341_MAG_00000029-scaffold_205; TARA_SAMEA6036341_MAG_00000029-scaffold_206; TARA_SAMEA6036341_MAG_00000029-scaffold_207; TARA_SAMEA6036341_MAG_00000029-scaffold_208; TARA_SAMEA6036341_MAG_00000029-scaffold_209; TARA_SAMEA6036341_MAG_00000029-scaffold_210; TARA_SAMEA6036341_MAG_00000029-scaffold_211; TARA_SAMEA6036341_MAG_00000029-scaffold_212; TARA_SAMEA6036341_MAG_00000029-scaffold_213; TARA_SAMEA6036341_MAG_00000029-scaffold_214; TARA_SAMEA6036341_MAG_00000029-scaffold_215; TARA_SAMEA6036341_MAG_00000029-scaffold_216; TARA_SAMEA6036341_MAG_00000029-scaffold_217; TARA_SAMEA6036341_MAG_00000029-scaffold_218; TARA_SAMEA6036341_MAG_00000029-scaffold_219; TARA_SAMEA6036341_MAG_00000029-scaffold_220; TARA_SAMEA6036341_MAG_00000029-scaffold_221; TARA_SAMEA6036341_MAG_00000029-scaffold_222; TARA_SAMEA6036341_MAG_00000029-scaffold_223; TARA_SAMEA6036341_MAG_00000029-scaffold_224; TARA_SAMEA6036341_MAG_00000029-scaffold_225; TARA_SAMEA6036341_MAG_00000029-scaffold_226; TARA_SAMEA6036341_MAG_00000029-scaffold_227

Compact view

TARA_SAMEA6036341_MAG_00000029-scaffold_1 - Region 1 - NRPS,T1PKS

Download region GenBank file

Download region SVG

Location: 1 - 58,829 nt. (total: 58,829 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 58829:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pk) + (cys) + (ohmal) + (trp) + (ohmal) + (ser) + (D-X) + (gly) + (D-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036341_MAG_00000029-scaffold_1_1

PKS_AT (80..299): pk

ATSignature: (unknown)

No matches above 50%

minowa: inactive

Prediction, score:

inactive: 59.6
Malonyl-CoA: 51.2
Propionyl-CoA: 16.8
Methylmalonyl-CoA: 14.8
Benzoyl-CoA: 13.6
Methoxymalonyl-CoA: 10.4
Isobutyryl-CoA: 6.1
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Acetyl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0
3-Methylbutyryl-CoA: -1.1

TARA_SAMEA6036341_MAG_00000029-scaffold_1_2

Search NORINE for peptide: strict or relaxed

AMP-binding (539..939): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DmYnfGVLWK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 70% (weak)

TARA_SAMEA6036341_MAG_00000029-scaffold_1_3

PKS_AT (524..813): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 87.5%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 157.6
inactive: 109.0
Methoxymalonyl-CoA: 61.8
Methylmalonyl-CoA: 45.7
Propionyl-CoA: 32.2
Isobutyryl-CoA: 24.3
Acetyl-CoA: 21.0
Ethylmalonyl-CoA: 19.7
2-Methylbutyryl-CoA: 19.2
Benzoyl-CoA: 18.7
CHC-CoA: 17.5
fatty_acid: 10.2
trans-1,2-CPDA: 0.0
3-Methylbutyryl-CoA: 0.0

TARA_SAMEA6036341_MAG_00000029-scaffold_1_4

Search NORINE for peptide: strict or relaxed

AMP-binding (497..891): trp

NRPSPredictor2: trp

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVSdIGAVsK
Nearest Stachelhaus code:: trp
Stachelhaus code match:: 80% (moderate)

TARA_SAMEA6036341_MAG_00000029-scaffold_1_5

PKS_AT (532..828): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 79.2%; 2-Rhyd-Malonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 169.1
inactive: 126.8
Methoxymalonyl-CoA: 57.4
Methylmalonyl-CoA: 48.1
Propionyl-CoA: 36.5
Isobutyryl-CoA: 26.8
Benzoyl-CoA: 24.0
fatty_acid: 20.6
2-Methylbutyryl-CoA: 19.9
Ethylmalonyl-CoA: 19.0
CHC-CoA: 18.8
Acetyl-CoA: 15.4
trans-1,2-CPDA: 0.0
3-Methylbutyryl-CoA: 0.0

TARA_SAMEA6036341_MAG_00000029-scaffold_1_6

Search NORINE for peptide: strict or relaxed

AMP-binding (544..944): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6036341_MAG_00000029-scaffold_1_7

Search NORINE for peptide: strict or relaxed

AMP-binding (472..872): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

TARA_SAMEA6036341_MAG_00000029-scaffold_1_8

Search NORINE for peptide: strict or relaxed

AMP-binding (469..860): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6036341_MAG_00000029-scaffold_1_10

Search NORINE for peptide: strict or relaxed

AMP-binding (452..855): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

TARA_SAMEA6036341_MAG_00000029-scaffold_5 - Region 1 - LAP

Download region GenBank file

Download region SVG

Location: 93,677 - 118,721 nt. (total: 25,045 nt) Show pHMM detection rules used

LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882 or TIGR03604)) or TIGR03603 or TIGR03602) and not cyanobactin_synth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

TARA_SAMEA6036341_MAG_00000029-scaffold_10 - Region 1 - RiPP-like,proteusin

Download region GenBank file

Download region SVG

Location: 5,890 - 26,408 nt. (total: 20,519 nt) Show pHMM detection rules used

proteusin: (PoyD or TIGR03793)
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

TARA_SAMEA6036341_MAG_00000029-scaffold_12 - Region 1 - thiopeptide

Download region GenBank file

Download region SVG

Location: 1 - 27,292 nt. (total: 27,292 nt) Show pHMM detection rules used

Region on contig edge.

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Thiopeptides

Thiopeptide predictions

No core peptides found.

Thiopeptides

Core peptide predictions

No core peptides found.

TARA_SAMEA6036341_MAG_00000029-scaffold_17 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 23,101 - 35,116 nt. (total: 12,016 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

TARA_SAMEA6036341_MAG_00000029-scaffold_19 - Region 1 - RRE-containing,lassopeptide

Download region GenBank file

Download region SVG

Location: 15,193 - 39,518 nt. (total: 24,326 nt) Show pHMM detection rules used

lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Lasso peptides

Lasso peptide predictions

Lassopeptides - No core peptides found.

Lasso peptides

Core peptide predictions

No core peptides found.

TARA_SAMEA6036341_MAG_00000029-scaffold_20 - Region 1 - RRE-containing,hglE-KS

Download region GenBank file

Download region SVG

Location: 35,711 - 69,031 nt. (total: 33,321 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])
hglE-KS: (hglE or hglD)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 35710 - 69031:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mxmal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 39966 - 69031:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mxmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036341_MAG_00000029-scaffold_20_42

PKS_AT (586..891): mxmal

ATSignature: (unknown)

No matches above 50%

minowa: Methoxymalonyl-CoA

Prediction, score:

Methoxymalonyl-CoA: 22.5
Methylmalonyl-CoA: 18.6
Propionyl-CoA: 16.8
trans-1,2-CPDA: 0.0
inactive: 0.0
fatty_acid: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0
Malonyl-CoA: -0.1

TARA_SAMEA6036341_MAG_00000029-scaffold_24 - Region 1 - cyanobactin

Download region GenBank file

Download region SVG

Location: 32,118 - 54,253 nt. (total: 22,136 nt) Show pHMM detection rules used

cyanobactin: (cyanobactin_synth or TIGR03678)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

TARA_SAMEA6036341_MAG_00000029-scaffold_25 - Region 1 - NRPS,T1PKS

Download region GenBank file

Download region SVG

Location: 1 - 61,358 nt. (total: 61,358 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 61358:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (asn) + (ohmal - ser) + (X) + (D-ohmal) + (gly) + (asn) + (NMe-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036341_MAG_00000029-scaffold_25_1

CAL_domain (165..493): pk

minowa: NH2

Prediction, score:

NH2: 156.0
Acetyl-CoA: 53.4
AHBA: 25.3
fatty_acid: 15.2
shikimic_acid: 8.8

TARA_SAMEA6036341_MAG_00000029-scaffold_25_3

Search NORINE for peptide: strict or relaxed

AMP-binding (466..867): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6036341_MAG_00000029-scaffold_25_5

Search NORINE for peptide: strict or relaxed

PKS_AT (538..824): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 87.5%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 166.4
inactive: 121.9
Methoxymalonyl-CoA: 61.8
Methylmalonyl-CoA: 54.2
Isobutyryl-CoA: 36.5
Benzoyl-CoA: 35.4
Propionyl-CoA: 29.2
Ethylmalonyl-CoA: 28.5
fatty_acid: 21.7
CHC-CoA: 21.4
2-Methylbutyryl-CoA: 20.3
Acetyl-CoA: 17.8
3-Methylbutyryl-CoA: 12.0
trans-1,2-CPDA: 0.0

AMP-binding (1974..2374): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6036341_MAG_00000029-scaffold_25_7

Search NORINE for peptide: strict or relaxed

AMP-binding (459..853): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

TARA_SAMEA6036341_MAG_00000029-scaffold_25_8

PKS_AT (541..826): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 83.3%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 181.5
inactive: 129.5
Methoxymalonyl-CoA: 65.7
Methylmalonyl-CoA: 52.9
Propionyl-CoA: 39.0
Isobutyryl-CoA: 37.6
Benzoyl-CoA: 27.2
Ethylmalonyl-CoA: 21.3
Acetyl-CoA: 15.9
fatty_acid: 15.7
2-Methylbutyryl-CoA: 12.6
CHC-CoA: 12.0
trans-1,2-CPDA: 0.0
3-Methylbutyryl-CoA: 0.0

TARA_SAMEA6036341_MAG_00000029-scaffold_25_9

Search NORINE for peptide: strict or relaxed

AMP-binding (471..874): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGilWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 80% (moderate)

TARA_SAMEA6036341_MAG_00000029-scaffold_25_10

Search NORINE for peptide: strict or relaxed

AMP-binding (466..882): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DaTKIGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

TARA_SAMEA6036341_MAG_00000029-scaffold_25_11

Search NORINE for peptide: strict or relaxed

AMP-binding (517..922): X

NRPSPredictor2: phe, trp, phg, tyr, bht

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAlFvGGiCK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 70% (weak)

TARA_SAMEA6036341_MAG_00000029-scaffold_34 - Region 1 - RRE-containing

Download region GenBank file

Download region SVG

Location: 25,390 - 45,743 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

TARA_SAMEA6036341_MAG_00000029-scaffold_36 - Region 1 - terpene

Download region GenBank file

Download region SVG

Location: 3,013 - 23,822 nt. (total: 20,810 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

TARA_SAMEA6036341_MAG_00000029-scaffold_38 - Region 1 - RRE-containing

Download region GenBank file

Download region SVG

Location: 24,269 - 46,530 nt. (total: 22,262 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

TARA_SAMEA6036341_MAG_00000029-scaffold_44 - Region 1 - NRPS,T1PKS

Download region GenBank file

Download region SVG

Location: 1 - 36,493 nt. (total: 36,493 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 36493:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Me-ccmal) + (ala) + (Me-mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036341_MAG_00000029-scaffold_44_2

PKS_AT (543..839): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 83.3%; 2-Rhyd-Malonyl-CoA: 62.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 175.3
inactive: 98.7
Methoxymalonyl-CoA: 67.6
Methylmalonyl-CoA: 57.1
Propionyl-CoA: 39.3
Ethylmalonyl-CoA: 37.6
Isobutyryl-CoA: 34.1
2-Methylbutyryl-CoA: 26.9
CHC-CoA: 22.0
Benzoyl-CoA: 21.3
trans-1,2-CPDA: 16.2
Acetyl-CoA: 16.0
fatty_acid: 15.0
3-Methylbutyryl-CoA: 0.0

TARA_SAMEA6036341_MAG_00000029-scaffold_44_4

Search NORINE for peptide: strict or relaxed

AMP-binding (536..929): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6036341_MAG_00000029-scaffold_44_5

PKS_AT (574..873): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 83.3%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: inactive

Prediction, score:

inactive: 190.0
Malonyl-CoA: 189.0
Methoxymalonyl-CoA: 72.2
Methylmalonyl-CoA: 65.9
Propionyl-CoA: 43.3
Ethylmalonyl-CoA: 36.5
Isobutyryl-CoA: 34.0
2-Methylbutyryl-CoA: 29.0
trans-1,2-CPDA: 27.6
Benzoyl-CoA: 22.9
Acetyl-CoA: 18.4
CHC-CoA: 17.4
fatty_acid: 10.3
3-Methylbutyryl-CoA: 5.3

TARA_SAMEA6036341_MAG_00000029-scaffold_58 - Region 1 - NRPS,NRPS-like,T1PKS

Download region GenBank file

Download region SVG

Location: 1 - 40,928 nt. (total: 40,928 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: cds(Condensation and (AMP-binding or A-OX))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 40928:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 0 - 36520:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 3943 - 40928:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036341_MAG_00000029-scaffold_58_11

Search NORINE for peptide: strict or relaxed

AMP-binding (792..1217): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DiWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 90% (moderate)

TARA_SAMEA6036341_MAG_00000029-scaffold_58_12

PKS_AT (114..411): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 100.0%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 191.8
inactive: 151.5
Methoxymalonyl-CoA: 59.9
Methylmalonyl-CoA: 55.4
Propionyl-CoA: 33.8
Isobutyryl-CoA: 30.0
trans-1,2-CPDA: 23.8
Ethylmalonyl-CoA: 23.6
2-Methylbutyryl-CoA: 21.6
Benzoyl-CoA: 21.1
Acetyl-CoA: 15.9
CHC-CoA: 15.4
fatty_acid: 10.0
3-Methylbutyryl-CoA: 9.4

TARA_SAMEA6036341_MAG_00000029-scaffold_58_14

CAL_domain (38..490): pk

minowa: NH2

Prediction, score:

NH2: 193.4
fatty_acid: 18.3
Acetyl-CoA: 0.5
shikimic_acid: 0.0
AHBA: 0.0

TARA_SAMEA6036341_MAG_00000029-scaffold_68 - Region 1 - T3PKS

Download region GenBank file

Download region SVG

Location: 1 - 37,197 nt. (total: 37,197 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

TARA_SAMEA6036341_MAG_00000029-scaffold_69 - Region 1 - NRPS,T1PKS

Download region GenBank file

Download region SVG

Location: 1 - 37,196 nt. (total: 37,196 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 37196:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (ohmal - cys) + (Me-cys) + (ccmal) + (Me-cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036341_MAG_00000029-scaffold_69_8

Search NORINE for peptide: strict or relaxed

AMP-binding (542..940): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6036341_MAG_00000029-scaffold_69_9

PKS_AT (529..825): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 79.2%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 183.1
inactive: 117.7
Methoxymalonyl-CoA: 65.9
Methylmalonyl-CoA: 58.5
Propionyl-CoA: 36.3
Isobutyryl-CoA: 29.1
Ethylmalonyl-CoA: 24.4
Acetyl-CoA: 23.9
2-Methylbutyryl-CoA: 20.5
CHC-CoA: 19.3
Benzoyl-CoA: 17.2
3-Methylbutyryl-CoA: 15.8
trans-1,2-CPDA: 11.9
fatty_acid: 0.0

TARA_SAMEA6036341_MAG_00000029-scaffold_69_10

Search NORINE for peptide: strict or relaxed

AMP-binding (522..922): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6036341_MAG_00000029-scaffold_69_11

Search NORINE for peptide: strict or relaxed

PKS_AT (520..807): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 87.5%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 155.6
inactive: 105.4
Methylmalonyl-CoA: 58.9
Methoxymalonyl-CoA: 52.5
Propionyl-CoA: 35.6
2-Methylbutyryl-CoA: 24.0
Ethylmalonyl-CoA: 22.8
CHC-CoA: 17.1
Benzoyl-CoA: 14.3
Isobutyryl-CoA: 13.6
trans-1,2-CPDA: 11.4
fatty_acid: 9.3
Acetyl-CoA: 8.0
3-Methylbutyryl-CoA: 0.0

AMP-binding (1993..2394): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6036341_MAG_00000029-scaffold_69_12

Search NORINE for peptide: strict or relaxed

AMP-binding (541..934): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6036341_MAG_00000029-scaffold_73 - Region 1 - transAT-PKS-like

Download region GenBank file

Download region SVG

Location: 7,299 - 36,426 nt. (total: 29,128 nt) Show pHMM detection rules used

Region on contig edge.

transAT-PKS-like: cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS) and not PKS_AT)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 7298 - 36426:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal - mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036341_MAG_00000029-scaffold_85 - Region 1 - thioamitides

Download region GenBank file

Download region SVG

Location: 1 - 23,133 nt. (total: 23,133 nt) Show pHMM detection rules used

Region on contig edge.

thioamitides: ((YcaO or TIGR03882) and TfuA)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

TARA_SAMEA6036341_MAG_00000029-scaffold_88 - Region 1 - thioamitides,thiopeptide

Download region GenBank file

Download region SVG

Location: 1 - 31,540 nt. (total: 31,540 nt) Show pHMM detection rules used

Region on contig edge.

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)
thioamitides: ((YcaO or TIGR03882) and TfuA)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Thiopeptides

Thiopeptide predictions

No core peptides found.

Thiopeptides

Core peptide predictions

No core peptides found.

TARA_SAMEA6036341_MAG_00000029-scaffold_90 - Region 1 - cyanobactin

Download region GenBank file

Download region SVG

Location: 4,641 - 31,101 nt. (total: 26,461 nt) Show pHMM detection rules used

Region on contig edge.

cyanobactin: (cyanobactin_synth or TIGR03678)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

TARA_SAMEA6036341_MAG_00000029-scaffold_91 - Region 1 - resorcinol

Download region GenBank file

Download region SVG

Location: 1 - 31,070 nt. (total: 31,070 nt) Show pHMM detection rules used

Region on contig edge.

resorcinol: DarB

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

TARA_SAMEA6036341_MAG_00000029-scaffold_93 - Region 1 - NRPS-like,T1PKS

Download region GenBank file

Download region SVG

Location: 874 - 30,460 nt. (total: 29,587 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 873 - 30460:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (mal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 5479 - 30460:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036341_MAG_00000029-scaffold_93_12

Search NORINE for peptide: strict or relaxed

AMP-binding (221..641): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: GlffLGASGK
Nearest Stachelhaus code:: alpha-hydroxy-isocaproic-acid
Stachelhaus code match:: 70% (weak)

TARA_SAMEA6036341_MAG_00000029-scaffold_93_13

PKS_AT (547..843): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 87.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 180.9
inactive: 152.2
Methylmalonyl-CoA: 64.4
Methoxymalonyl-CoA: 64.4
Propionyl-CoA: 44.2
Benzoyl-CoA: 34.6
Ethylmalonyl-CoA: 32.6
2-Methylbutyryl-CoA: 31.4
Isobutyryl-CoA: 28.8
CHC-CoA: 25.4
trans-1,2-CPDA: 18.7
Acetyl-CoA: 18.0
fatty_acid: 10.1
3-Methylbutyryl-CoA: 0.0

TARA_SAMEA6036341_MAG_00000029-scaffold_105 - Region 1 - NRPS,T1PKS

Download region GenBank file

Download region SVG

Location: 1 - 26,814 nt. (total: 26,814 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 26814:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu) + (Me-redmal) + (ohmal) + (NMe-ala-b)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036341_MAG_00000029-scaffold_105_6

Search NORINE for peptide: strict or relaxed

AMP-binding (512..946): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGNVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6036341_MAG_00000029-scaffold_105_7

PKS_AT (536..832): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 91.7%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 196.4
inactive: 131.4
Methoxymalonyl-CoA: 74.7
Methylmalonyl-CoA: 64.3
Propionyl-CoA: 43.2
Isobutyryl-CoA: 33.8
Benzoyl-CoA: 30.7
Ethylmalonyl-CoA: 29.7
2-Methylbutyryl-CoA: 27.1
CHC-CoA: 20.8
Acetyl-CoA: 19.5
trans-1,2-CPDA: 17.0
fatty_acid: 11.2
3-Methylbutyryl-CoA: 7.8

TARA_SAMEA6036341_MAG_00000029-scaffold_105_8

PKS_AT (537..833): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 91.7%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 193.3
inactive: 125.8
Methoxymalonyl-CoA: 72.2
Methylmalonyl-CoA: 57.6
Propionyl-CoA: 43.1
2-Methylbutyryl-CoA: 28.1
Isobutyryl-CoA: 25.0
CHC-CoA: 22.4
Ethylmalonyl-CoA: 21.4
Benzoyl-CoA: 19.7
Acetyl-CoA: 16.6
trans-1,2-CPDA: 12.2
3-Methylbutyryl-CoA: 9.7
fatty_acid: 0.0

TARA_SAMEA6036341_MAG_00000029-scaffold_105_9

Search NORINE for peptide: strict or relaxed

AMP-binding (501..913): ala-b

NRPSPredictor2: ala-b

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: phe, trp
Single AA prediction:: phe

Stachelhaus prediction details:

Stachelhaus sequence:: VDWVISfAnK
Nearest Stachelhaus code:: ala-b
Stachelhaus code match:: 80% (moderate)

TARA_SAMEA6036341_MAG_00000029-scaffold_111 - Region 1 - NRPS

Download region GenBank file

Download region SVG

Location: 1 - 25,122 nt. (total: 25,122 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 25122:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (tyr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036341_MAG_00000029-scaffold_111_19

Search NORINE for peptide: strict or relaxed

CAL_domain (53..496): pk

minowa: NH2

Prediction, score:

NH2: 196.8
fatty_acid: 30.7
AHBA: 7.2
Acetyl-CoA: 2.3
shikimic_acid: 0.0

AMP-binding (1172..1565): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DASiVAAVCK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 90% (moderate)

TARA_SAMEA6036341_MAG_00000029-scaffold_113 - Region 1 - T1PKS

Download region GenBank file

Download region SVG

Location: 1 - 24,858 nt. (total: 24,858 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 24858:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036341_MAG_00000029-scaffold_113_5

CAL_domain (152..485): pk

minowa: NH2

Prediction, score:

NH2: 131.8
Acetyl-CoA: 54.2
fatty_acid: 28.1
AHBA: 19.3
shikimic_acid: 12.4

TARA_SAMEA6036341_MAG_00000029-scaffold_113_8

PKS_AT (531..739): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 58.3%; inactive: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 66.9
inactive: 64.9
Methylmalonyl-CoA: 27.6
2-Methylbutyryl-CoA: 24.7
Methoxymalonyl-CoA: 22.2
Propionyl-CoA: 21.5
CHC-CoA: 21.5
trans-1,2-CPDA: 19.6
Ethylmalonyl-CoA: 14.9
Isobutyryl-CoA: 14.8
Benzoyl-CoA: 12.4
Acetyl-CoA: 10.4
3-Methylbutyryl-CoA: 7.6
fatty_acid: 0.0

TARA_SAMEA6036341_MAG_00000029-scaffold_116 - Region 1 - terpene

Download region GenBank file

Download region SVG

Location: 4,439 - 24,248 nt. (total: 19,810 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

TARA_SAMEA6036341_MAG_00000029-scaffold_122 - Region 1 - NRPS-like,T1PKS

Download region GenBank file

Download region SVG

Location: 1 - 22,586 nt. (total: 22,586 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 22586:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal) + (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6036341_MAG_00000029-scaffold_122_1

PKS_AT (568..865): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 100.0%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 198.5
inactive: 172.6
Methoxymalonyl-CoA: 75.5
Methylmalonyl-CoA: 69.4
Propionyl-CoA: 43.4
Isobutyryl-CoA: 39.7
Ethylmalonyl-CoA: 36.4
CHC-CoA: 25.2
Acetyl-CoA: 22.3
2-Methylbutyryl-CoA: 21.3
Benzoyl-CoA: 20.4
trans-1,2-CPDA: 18.7
fatty_acid: 17.4
3-Methylbutyryl-CoA: 10.5

TARA_SAMEA6036341_MAG_00000029-scaffold_122_2

CAL_domain (49..490): pk

minowa: NH2

Prediction, score:

NH2: 207.1
AHBA: 12.4
fatty_acid: 8.7
Acetyl-CoA: 1.2
shikimic_acid: 0.0

PKS_AT (1255..1551): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 87.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 207.2
inactive: 177.8
Methoxymalonyl-CoA: 63.3
Methylmalonyl-CoA: 59.7
Propionyl-CoA: 40.4
Isobutyryl-CoA: 36.5
Benzoyl-CoA: 24.7
CHC-CoA: 20.1
Acetyl-CoA: 19.9
Ethylmalonyl-CoA: 17.3
2-Methylbutyryl-CoA: 14.8
trans-1,2-CPDA: 14.6
fatty_acid: 13.8
3-Methylbutyryl-CoA: 0.0

TARA_SAMEA6036341_MAG_00000029-scaffold_134 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 5,734 - 16,612 nt. (total: 10,879 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

TARA_SAMEA6036341_MAG_00000029-scaffold_136 - Region 1 - terpene

Download region GenBank file

Download region SVG

Location: 1 - 17,750 nt. (total: 17,750 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

TARA_SAMEA6036341_MAG_00000029-scaffold_141 - Region 1 - T1PKS

Download region GenBank file

Download region SVG

Location: 1 - 18,260 nt. (total: 18,260 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

TARA_SAMEA6036341_MAG_00000029-scaffold_181 - Region 1 - NRPS-like

Download region GenBank file

Download region SVG

Location: 1 - 12,334 nt. (total: 12,334 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

TARA_SAMEA6036341_MAG_00000029-scaffold_197 - Region 1 - terpene

Download region GenBank file

Download region SVG

Location: 1 - 10,109 nt. (total: 10,109 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

TARA_SAMEA6036341_MAG_00000029-scaffold_202 - Region 1 - microviridin

Download region GenBank file

Download region SVG

Location: 1 - 8,689 nt. (total: 8,689 nt) Show pHMM detection rules used

Region on contig edge.

microviridin: (mvd or mvnA)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it