TARA_SAMEA6019949_MAG_00000026 - 12 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

TARA_SAMEA6019949_MAG_00000026-scaffold_8

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	terpene	1,859	23,763

TARA_SAMEA6019949_MAG_00000026-scaffold_10

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	terpene	59,038	79,979

TARA_SAMEA6019949_MAG_00000026-scaffold_19

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	CDPS	16,589	37,749

TARA_SAMEA6019949_MAG_00000026-scaffold_27

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	lanthipeptide-class-ii	13,165	36,500

TARA_SAMEA6019949_MAG_00000026-scaffold_29

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	NRPS	4,339	48,337

TARA_SAMEA6019949_MAG_00000026-scaffold_40

Region	Type	From	To	Most similar known cluster		Similarity
Region 40.1	T1PKS,NRPS-like	5,735	40,328

TARA_SAMEA6019949_MAG_00000026-scaffold_51

Region	Type	From	To	Most similar known cluster		Similarity
Region 51.1	terpene	10,505	31,317

TARA_SAMEA6019949_MAG_00000026-scaffold_55

Region	Type	From	To	Most similar known cluster		Similarity
Region 55.1	T3PKS	1	25,576

TARA_SAMEA6019949_MAG_00000026-scaffold_57

Region	Type	From	To	Most similar known cluster		Similarity
Region 57.1	siderophore	126	17,021

TARA_SAMEA6019949_MAG_00000026-scaffold_80

Region	Type	From	To	Most similar known cluster		Similarity
Region 80.1	NRPS,T1PKS	1	14,592

TARA_SAMEA6019949_MAG_00000026-scaffold_99

Region	Type	From	To	Most similar known cluster		Similarity
Region 99.1	hglE-KS	1	8,245

TARA_SAMEA6019949_MAG_00000026-scaffold_101

Region	Type	From	To	Most similar known cluster		Similarity
Region 101.1	hglE-KS	1	7,243

Region	Type	From	To	Similarity
Region 8.1	terpene	1,859	23,763
Region 10.1	terpene	59,038	79,979
Region 19.1	CDPS	16,589	37,749
Region 27.1	lanthipeptide-class-ii	13,165	36,500
Region 29.1	NRPS	4,339	48,337
Region 40.1	T1PKS,NRPS-like	5,735	40,328
Region 51.1	terpene	10,505	31,317
Region 55.1	T3PKS	1	25,576
Region 57.1	siderophore	126	17,021
Region 80.1	NRPS,T1PKS	1	14,592
Region 99.1	hglE-KS	1	8,245
Region 101.1	hglE-KS	1	7,243

No secondary metabolite regions were found in these records:: TARA_SAMEA6019949_MAG_00000026-scaffold_1; TARA_SAMEA6019949_MAG_00000026-scaffold_2; TARA_SAMEA6019949_MAG_00000026-scaffold_3; TARA_SAMEA6019949_MAG_00000026-scaffold_4; TARA_SAMEA6019949_MAG_00000026-scaffold_5; TARA_SAMEA6019949_MAG_00000026-scaffold_6; TARA_SAMEA6019949_MAG_00000026-scaffold_7; TARA_SAMEA6019949_MAG_00000026-scaffold_9; TARA_SAMEA6019949_MAG_00000026-scaffold_11; TARA_SAMEA6019949_MAG_00000026-scaffold_12; TARA_SAMEA6019949_MAG_00000026-scaffold_13; TARA_SAMEA6019949_MAG_00000026-scaffold_14; TARA_SAMEA6019949_MAG_00000026-scaffold_15; TARA_SAMEA6019949_MAG_00000026-scaffold_16; TARA_SAMEA6019949_MAG_00000026-scaffold_17; TARA_SAMEA6019949_MAG_00000026-scaffold_18; TARA_SAMEA6019949_MAG_00000026-scaffold_20; TARA_SAMEA6019949_MAG_00000026-scaffold_21; TARA_SAMEA6019949_MAG_00000026-scaffold_22; TARA_SAMEA6019949_MAG_00000026-scaffold_23; TARA_SAMEA6019949_MAG_00000026-scaffold_24; TARA_SAMEA6019949_MAG_00000026-scaffold_25; TARA_SAMEA6019949_MAG_00000026-scaffold_26; TARA_SAMEA6019949_MAG_00000026-scaffold_28; TARA_SAMEA6019949_MAG_00000026-scaffold_30; TARA_SAMEA6019949_MAG_00000026-scaffold_31; TARA_SAMEA6019949_MAG_00000026-scaffold_32; TARA_SAMEA6019949_MAG_00000026-scaffold_33; TARA_SAMEA6019949_MAG_00000026-scaffold_34; TARA_SAMEA6019949_MAG_00000026-scaffold_35; TARA_SAMEA6019949_MAG_00000026-scaffold_36; TARA_SAMEA6019949_MAG_00000026-scaffold_37; TARA_SAMEA6019949_MAG_00000026-scaffold_38; TARA_SAMEA6019949_MAG_00000026-scaffold_39; TARA_SAMEA6019949_MAG_00000026-scaffold_41; TARA_SAMEA6019949_MAG_00000026-scaffold_42; TARA_SAMEA6019949_MAG_00000026-scaffold_43; TARA_SAMEA6019949_MAG_00000026-scaffold_44; TARA_SAMEA6019949_MAG_00000026-scaffold_45; TARA_SAMEA6019949_MAG_00000026-scaffold_46; TARA_SAMEA6019949_MAG_00000026-scaffold_47; TARA_SAMEA6019949_MAG_00000026-scaffold_48; TARA_SAMEA6019949_MAG_00000026-scaffold_49; TARA_SAMEA6019949_MAG_00000026-scaffold_50; TARA_SAMEA6019949_MAG_00000026-scaffold_52; TARA_SAMEA6019949_MAG_00000026-scaffold_53; TARA_SAMEA6019949_MAG_00000026-scaffold_54; TARA_SAMEA6019949_MAG_00000026-scaffold_56; TARA_SAMEA6019949_MAG_00000026-scaffold_58; TARA_SAMEA6019949_MAG_00000026-scaffold_59; TARA_SAMEA6019949_MAG_00000026-scaffold_60; TARA_SAMEA6019949_MAG_00000026-scaffold_61; TARA_SAMEA6019949_MAG_00000026-scaffold_62; TARA_SAMEA6019949_MAG_00000026-scaffold_63; TARA_SAMEA6019949_MAG_00000026-scaffold_64; TARA_SAMEA6019949_MAG_00000026-scaffold_65; TARA_SAMEA6019949_MAG_00000026-scaffold_66; TARA_SAMEA6019949_MAG_00000026-scaffold_67; TARA_SAMEA6019949_MAG_00000026-scaffold_68; TARA_SAMEA6019949_MAG_00000026-scaffold_69; TARA_SAMEA6019949_MAG_00000026-scaffold_70; TARA_SAMEA6019949_MAG_00000026-scaffold_71; TARA_SAMEA6019949_MAG_00000026-scaffold_72; TARA_SAMEA6019949_MAG_00000026-scaffold_73; TARA_SAMEA6019949_MAG_00000026-scaffold_74; TARA_SAMEA6019949_MAG_00000026-scaffold_75; TARA_SAMEA6019949_MAG_00000026-scaffold_76; TARA_SAMEA6019949_MAG_00000026-scaffold_77; TARA_SAMEA6019949_MAG_00000026-scaffold_78; TARA_SAMEA6019949_MAG_00000026-scaffold_79; TARA_SAMEA6019949_MAG_00000026-scaffold_81; TARA_SAMEA6019949_MAG_00000026-scaffold_82; TARA_SAMEA6019949_MAG_00000026-scaffold_83; TARA_SAMEA6019949_MAG_00000026-scaffold_84; TARA_SAMEA6019949_MAG_00000026-scaffold_85; TARA_SAMEA6019949_MAG_00000026-scaffold_86; TARA_SAMEA6019949_MAG_00000026-scaffold_87; TARA_SAMEA6019949_MAG_00000026-scaffold_88; TARA_SAMEA6019949_MAG_00000026-scaffold_89; TARA_SAMEA6019949_MAG_00000026-scaffold_90; TARA_SAMEA6019949_MAG_00000026-scaffold_91; TARA_SAMEA6019949_MAG_00000026-scaffold_92; TARA_SAMEA6019949_MAG_00000026-scaffold_93; TARA_SAMEA6019949_MAG_00000026-scaffold_94; TARA_SAMEA6019949_MAG_00000026-scaffold_95; TARA_SAMEA6019949_MAG_00000026-scaffold_96; TARA_SAMEA6019949_MAG_00000026-scaffold_97; TARA_SAMEA6019949_MAG_00000026-scaffold_98; TARA_SAMEA6019949_MAG_00000026-scaffold_100; TARA_SAMEA6019949_MAG_00000026-scaffold_102; TARA_SAMEA6019949_MAG_00000026-scaffold_103; TARA_SAMEA6019949_MAG_00000026-scaffold_104; TARA_SAMEA6019949_MAG_00000026-scaffold_105; TARA_SAMEA6019949_MAG_00000026-scaffold_106; TARA_SAMEA6019949_MAG_00000026-scaffold_107; TARA_SAMEA6019949_MAG_00000026-scaffold_108; TARA_SAMEA6019949_MAG_00000026-scaffold_109; TARA_SAMEA6019949_MAG_00000026-scaffold_110; TARA_SAMEA6019949_MAG_00000026-scaffold_111; TARA_SAMEA6019949_MAG_00000026-scaffold_112

Compact view

TARA_SAMEA6019949_MAG_00000026-scaffold_8 - Region 1 - terpene

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Location: 1,859 - 23,763 nt. (total: 21,905 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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TARA_SAMEA6019949_MAG_00000026-scaffold_10 - Region 1 - terpene

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Location: 59,038 - 79,979 nt. (total: 20,942 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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TARA_SAMEA6019949_MAG_00000026-scaffold_19 - Region 1 - CDPS

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Location: 16,589 - 37,749 nt. (total: 21,161 nt) Show pHMM detection rules used

CDPS: (CDPS or cycdipepsynth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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NRPS/PKS domains

Detailed domain annotation

Selected features only

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TARA_SAMEA6019949_MAG_00000026-scaffold_27 - Region 1 - lanthipeptide-class-ii

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Location: 13,165 - 36,500 nt. (total: 23,336 nt) Show pHMM detection rules used

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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Lanthipeptides

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

TARA_SAMEA6019949_MAG_00000026-scaffold_29 - Region 1 - NRPS

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Location: 4,339 - 48,337 nt. (total: 43,999 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 4338 - 48337:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6019949_MAG_00000026-scaffold_29_24

Search NORINE for peptide: strict or relaxed

AMP-binding (477..874): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6019949_MAG_00000026-scaffold_40 - Region 1 - NRPS-like,T1PKS

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Location: 5,735 - 40,328 nt. (total: 34,594 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 5734 - 40328:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6019949_MAG_00000026-scaffold_40_28

CAL_domain (38..479): pk

minowa: NH2

Prediction, score:

NH2: 28.7
fatty_acid: 17.2
AHBA: 4.0
Acetyl-CoA: 3.7
shikimic_acid: 0.0

PKS_AT (1204..1495): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 95.8%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: inactive

Prediction, score:

inactive: 197.8
Malonyl-CoA: 189.2
Methoxymalonyl-CoA: 65.8
Methylmalonyl-CoA: 53.8
Isobutyryl-CoA: 33.2
Propionyl-CoA: 31.5
Benzoyl-CoA: 31.0
Ethylmalonyl-CoA: 17.5
Acetyl-CoA: 15.8
2-Methylbutyryl-CoA: 10.6
CHC-CoA: 10.5
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
3-Methylbutyryl-CoA: 0.0

TARA_SAMEA6019949_MAG_00000026-scaffold_51 - Region 1 - terpene

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Location: 10,505 - 31,317 nt. (total: 20,813 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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TARA_SAMEA6019949_MAG_00000026-scaffold_55 - Region 1 - T3PKS

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Location: 1 - 25,576 nt. (total: 25,576 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

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TARA_SAMEA6019949_MAG_00000026-scaffold_57 - Region 1 - siderophore

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Location: 126 - 17,021 nt. (total: 16,896 nt) Show pHMM detection rules used

siderophore: IucA_IucC

Legend:

core biosynthetic genes

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TARA_SAMEA6019949_MAG_00000026-scaffold_80 - Region 1 - NRPS,T1PKS

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Location: 1 - 14,592 nt. (total: 14,592 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 14592:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal - D-asn)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6019949_MAG_00000026-scaffold_80_4

Search NORINE for peptide: strict or relaxed

CAL_domain (155..479): pk

minowa: NH2

Prediction, score:

NH2: 196.4
Acetyl-CoA: 39.7
fatty_acid: 13.6
shikimic_acid: 0.0
AHBA: 0.0

PKS_AT (1245..1544): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 91.7%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 169.4
inactive: 139.6
Methoxymalonyl-CoA: 48.1
Methylmalonyl-CoA: 46.9
Isobutyryl-CoA: 38.7
Propionyl-CoA: 32.1
Acetyl-CoA: 19.6
Benzoyl-CoA: 15.8
2-Methylbutyryl-CoA: 12.4
CHC-CoA: 11.5
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Ethylmalonyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

AMP-binding (2758..3160): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DaTKIGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

TARA_SAMEA6019949_MAG_00000026-scaffold_99 - Region 1 - hglE-KS

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Location: 1 - 8,245 nt. (total: 8,245 nt) Show pHMM detection rules used

Region on contig edge.

hglE-KS: (hglE or hglD)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

TARA_SAMEA6019949_MAG_00000026-scaffold_101 - Region 1 - hglE-KS

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Location: 1 - 7,243 nt. (total: 7,243 nt) Show pHMM detection rules used

Region on contig edge.

hglE-KS: (hglE or hglD)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains