TARA_SAMEA6015835_MAG_00000020 - 15 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

TARA_SAMEA6015835_MAG_00000020-scaffold_2

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	resorcinol	43,915	85,063
Region 2.2	proteusin	106,774	117,372

TARA_SAMEA6015835_MAG_00000020-scaffold_5

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	hglE-KS	6,403	58,037

TARA_SAMEA6015835_MAG_00000020-scaffold_7

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	NRPS	14,673	58,716

TARA_SAMEA6015835_MAG_00000020-scaffold_9

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	terpene	36,906	58,810

TARA_SAMEA6015835_MAG_00000020-scaffold_13

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	proteusin	1	20,481

TARA_SAMEA6015835_MAG_00000020-scaffold_15

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	CDPS	32,165	53,325

TARA_SAMEA6015835_MAG_00000020-scaffold_19

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	terpene	28,572	49,384

TARA_SAMEA6015835_MAG_00000020-scaffold_37

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	T1PKS,NRPS-like	4,355	39,186

TARA_SAMEA6015835_MAG_00000020-scaffold_43

Region	Type	From	To	Most similar known cluster		Similarity
Region 43.1	T3PKS	1	29,655

TARA_SAMEA6015835_MAG_00000020-scaffold_51

Region	Type	From	To	Most similar known cluster		Similarity
Region 51.1	NRPS,T1PKS	1	32,367

TARA_SAMEA6015835_MAG_00000020-scaffold_79

Region	Type	From	To	Most similar known cluster		Similarity
Region 79.1	siderophore	381	17,279

TARA_SAMEA6015835_MAG_00000020-scaffold_121

Region	Type	From	To	Most similar known cluster		Similarity
Region 121.1	terpene	1	12,427

TARA_SAMEA6015835_MAG_00000020-scaffold_142

Region	Type	From	To	Most similar known cluster		Similarity
Region 142.1	lanthipeptide-class-ii	1	9,241

TARA_SAMEA6015835_MAG_00000020-scaffold_147

Region	Type	From	To	Most similar known cluster		Similarity
Region 147.1	RRE-containing	1	8,933

Region	Type	From	To	Similarity
Region 2.1	resorcinol	43,915	85,063
Region 2.2	proteusin	106,774	117,372
Region 5.1	hglE-KS	6,403	58,037
Region 7.1	NRPS	14,673	58,716
Region 9.1	terpene	36,906	58,810
Region 13.1	proteusin	1	20,481
Region 15.1	CDPS	32,165	53,325
Region 19.1	terpene	28,572	49,384
Region 37.1	T1PKS,NRPS-like	4,355	39,186
Region 43.1	T3PKS	1	29,655
Region 51.1	NRPS,T1PKS	1	32,367
Region 79.1	siderophore	381	17,279
Region 121.1	terpene	1	12,427
Region 142.1	lanthipeptide-class-ii	1	9,241
Region 147.1	RRE-containing	1	8,933

No secondary metabolite regions were found in these records:: TARA_SAMEA6015835_MAG_00000020-scaffold_1; TARA_SAMEA6015835_MAG_00000020-scaffold_3; TARA_SAMEA6015835_MAG_00000020-scaffold_4; TARA_SAMEA6015835_MAG_00000020-scaffold_6; TARA_SAMEA6015835_MAG_00000020-scaffold_8; TARA_SAMEA6015835_MAG_00000020-scaffold_10; TARA_SAMEA6015835_MAG_00000020-scaffold_11; TARA_SAMEA6015835_MAG_00000020-scaffold_12; TARA_SAMEA6015835_MAG_00000020-scaffold_14; TARA_SAMEA6015835_MAG_00000020-scaffold_16; TARA_SAMEA6015835_MAG_00000020-scaffold_17; TARA_SAMEA6015835_MAG_00000020-scaffold_18; TARA_SAMEA6015835_MAG_00000020-scaffold_20; TARA_SAMEA6015835_MAG_00000020-scaffold_21; TARA_SAMEA6015835_MAG_00000020-scaffold_22; TARA_SAMEA6015835_MAG_00000020-scaffold_23; TARA_SAMEA6015835_MAG_00000020-scaffold_24; TARA_SAMEA6015835_MAG_00000020-scaffold_25; TARA_SAMEA6015835_MAG_00000020-scaffold_26; TARA_SAMEA6015835_MAG_00000020-scaffold_27; TARA_SAMEA6015835_MAG_00000020-scaffold_28; TARA_SAMEA6015835_MAG_00000020-scaffold_29; TARA_SAMEA6015835_MAG_00000020-scaffold_30; TARA_SAMEA6015835_MAG_00000020-scaffold_31; TARA_SAMEA6015835_MAG_00000020-scaffold_32; TARA_SAMEA6015835_MAG_00000020-scaffold_33; TARA_SAMEA6015835_MAG_00000020-scaffold_34; TARA_SAMEA6015835_MAG_00000020-scaffold_35; TARA_SAMEA6015835_MAG_00000020-scaffold_36; TARA_SAMEA6015835_MAG_00000020-scaffold_38; TARA_SAMEA6015835_MAG_00000020-scaffold_39; TARA_SAMEA6015835_MAG_00000020-scaffold_40; TARA_SAMEA6015835_MAG_00000020-scaffold_41; TARA_SAMEA6015835_MAG_00000020-scaffold_42; TARA_SAMEA6015835_MAG_00000020-scaffold_44; TARA_SAMEA6015835_MAG_00000020-scaffold_45; TARA_SAMEA6015835_MAG_00000020-scaffold_46; TARA_SAMEA6015835_MAG_00000020-scaffold_47; TARA_SAMEA6015835_MAG_00000020-scaffold_48; TARA_SAMEA6015835_MAG_00000020-scaffold_49; TARA_SAMEA6015835_MAG_00000020-scaffold_50; TARA_SAMEA6015835_MAG_00000020-scaffold_52; TARA_SAMEA6015835_MAG_00000020-scaffold_53; TARA_SAMEA6015835_MAG_00000020-scaffold_54; TARA_SAMEA6015835_MAG_00000020-scaffold_55; TARA_SAMEA6015835_MAG_00000020-scaffold_56; TARA_SAMEA6015835_MAG_00000020-scaffold_57; TARA_SAMEA6015835_MAG_00000020-scaffold_58; TARA_SAMEA6015835_MAG_00000020-scaffold_59; TARA_SAMEA6015835_MAG_00000020-scaffold_60; TARA_SAMEA6015835_MAG_00000020-scaffold_61; TARA_SAMEA6015835_MAG_00000020-scaffold_62; TARA_SAMEA6015835_MAG_00000020-scaffold_63; TARA_SAMEA6015835_MAG_00000020-scaffold_64; TARA_SAMEA6015835_MAG_00000020-scaffold_65; TARA_SAMEA6015835_MAG_00000020-scaffold_66; TARA_SAMEA6015835_MAG_00000020-scaffold_67; TARA_SAMEA6015835_MAG_00000020-scaffold_68; TARA_SAMEA6015835_MAG_00000020-scaffold_69; TARA_SAMEA6015835_MAG_00000020-scaffold_70; TARA_SAMEA6015835_MAG_00000020-scaffold_71; TARA_SAMEA6015835_MAG_00000020-scaffold_72; TARA_SAMEA6015835_MAG_00000020-scaffold_73; TARA_SAMEA6015835_MAG_00000020-scaffold_74; TARA_SAMEA6015835_MAG_00000020-scaffold_75; TARA_SAMEA6015835_MAG_00000020-scaffold_76; TARA_SAMEA6015835_MAG_00000020-scaffold_77; TARA_SAMEA6015835_MAG_00000020-scaffold_78; TARA_SAMEA6015835_MAG_00000020-scaffold_80; TARA_SAMEA6015835_MAG_00000020-scaffold_81; TARA_SAMEA6015835_MAG_00000020-scaffold_82; TARA_SAMEA6015835_MAG_00000020-scaffold_83; TARA_SAMEA6015835_MAG_00000020-scaffold_84; TARA_SAMEA6015835_MAG_00000020-scaffold_85; TARA_SAMEA6015835_MAG_00000020-scaffold_86; TARA_SAMEA6015835_MAG_00000020-scaffold_87; TARA_SAMEA6015835_MAG_00000020-scaffold_88; TARA_SAMEA6015835_MAG_00000020-scaffold_89; TARA_SAMEA6015835_MAG_00000020-scaffold_90; TARA_SAMEA6015835_MAG_00000020-scaffold_91; TARA_SAMEA6015835_MAG_00000020-scaffold_92; TARA_SAMEA6015835_MAG_00000020-scaffold_93; TARA_SAMEA6015835_MAG_00000020-scaffold_94; TARA_SAMEA6015835_MAG_00000020-scaffold_95; TARA_SAMEA6015835_MAG_00000020-scaffold_96; TARA_SAMEA6015835_MAG_00000020-scaffold_97; TARA_SAMEA6015835_MAG_00000020-scaffold_98; TARA_SAMEA6015835_MAG_00000020-scaffold_99; TARA_SAMEA6015835_MAG_00000020-scaffold_100; TARA_SAMEA6015835_MAG_00000020-scaffold_101; TARA_SAMEA6015835_MAG_00000020-scaffold_102; TARA_SAMEA6015835_MAG_00000020-scaffold_103; TARA_SAMEA6015835_MAG_00000020-scaffold_104; TARA_SAMEA6015835_MAG_00000020-scaffold_105; TARA_SAMEA6015835_MAG_00000020-scaffold_106; TARA_SAMEA6015835_MAG_00000020-scaffold_107; TARA_SAMEA6015835_MAG_00000020-scaffold_108; TARA_SAMEA6015835_MAG_00000020-scaffold_109; TARA_SAMEA6015835_MAG_00000020-scaffold_110; TARA_SAMEA6015835_MAG_00000020-scaffold_111; TARA_SAMEA6015835_MAG_00000020-scaffold_112; TARA_SAMEA6015835_MAG_00000020-scaffold_113; TARA_SAMEA6015835_MAG_00000020-scaffold_114; TARA_SAMEA6015835_MAG_00000020-scaffold_115; TARA_SAMEA6015835_MAG_00000020-scaffold_116; TARA_SAMEA6015835_MAG_00000020-scaffold_117; TARA_SAMEA6015835_MAG_00000020-scaffold_118; TARA_SAMEA6015835_MAG_00000020-scaffold_119; TARA_SAMEA6015835_MAG_00000020-scaffold_120; TARA_SAMEA6015835_MAG_00000020-scaffold_122; TARA_SAMEA6015835_MAG_00000020-scaffold_123; TARA_SAMEA6015835_MAG_00000020-scaffold_124; TARA_SAMEA6015835_MAG_00000020-scaffold_125; TARA_SAMEA6015835_MAG_00000020-scaffold_126; TARA_SAMEA6015835_MAG_00000020-scaffold_127; TARA_SAMEA6015835_MAG_00000020-scaffold_128; TARA_SAMEA6015835_MAG_00000020-scaffold_129; TARA_SAMEA6015835_MAG_00000020-scaffold_130; TARA_SAMEA6015835_MAG_00000020-scaffold_131; TARA_SAMEA6015835_MAG_00000020-scaffold_132; TARA_SAMEA6015835_MAG_00000020-scaffold_133; TARA_SAMEA6015835_MAG_00000020-scaffold_134; TARA_SAMEA6015835_MAG_00000020-scaffold_135; TARA_SAMEA6015835_MAG_00000020-scaffold_136; TARA_SAMEA6015835_MAG_00000020-scaffold_137; TARA_SAMEA6015835_MAG_00000020-scaffold_138; TARA_SAMEA6015835_MAG_00000020-scaffold_139; TARA_SAMEA6015835_MAG_00000020-scaffold_140; TARA_SAMEA6015835_MAG_00000020-scaffold_141; TARA_SAMEA6015835_MAG_00000020-scaffold_143; TARA_SAMEA6015835_MAG_00000020-scaffold_144; TARA_SAMEA6015835_MAG_00000020-scaffold_145; TARA_SAMEA6015835_MAG_00000020-scaffold_146; TARA_SAMEA6015835_MAG_00000020-scaffold_148; TARA_SAMEA6015835_MAG_00000020-scaffold_149; TARA_SAMEA6015835_MAG_00000020-scaffold_150; TARA_SAMEA6015835_MAG_00000020-scaffold_151; TARA_SAMEA6015835_MAG_00000020-scaffold_152; TARA_SAMEA6015835_MAG_00000020-scaffold_153; TARA_SAMEA6015835_MAG_00000020-scaffold_154; TARA_SAMEA6015835_MAG_00000020-scaffold_155; TARA_SAMEA6015835_MAG_00000020-scaffold_156; TARA_SAMEA6015835_MAG_00000020-scaffold_157; TARA_SAMEA6015835_MAG_00000020-scaffold_158; TARA_SAMEA6015835_MAG_00000020-scaffold_159; TARA_SAMEA6015835_MAG_00000020-scaffold_160; TARA_SAMEA6015835_MAG_00000020-scaffold_161; TARA_SAMEA6015835_MAG_00000020-scaffold_162; TARA_SAMEA6015835_MAG_00000020-scaffold_163; TARA_SAMEA6015835_MAG_00000020-scaffold_164; TARA_SAMEA6015835_MAG_00000020-scaffold_165; TARA_SAMEA6015835_MAG_00000020-scaffold_166; TARA_SAMEA6015835_MAG_00000020-scaffold_167; TARA_SAMEA6015835_MAG_00000020-scaffold_168; TARA_SAMEA6015835_MAG_00000020-scaffold_169; TARA_SAMEA6015835_MAG_00000020-scaffold_170; TARA_SAMEA6015835_MAG_00000020-scaffold_171; TARA_SAMEA6015835_MAG_00000020-scaffold_172; TARA_SAMEA6015835_MAG_00000020-scaffold_173; TARA_SAMEA6015835_MAG_00000020-scaffold_174; TARA_SAMEA6015835_MAG_00000020-scaffold_175; TARA_SAMEA6015835_MAG_00000020-scaffold_176; TARA_SAMEA6015835_MAG_00000020-scaffold_177; TARA_SAMEA6015835_MAG_00000020-scaffold_178; TARA_SAMEA6015835_MAG_00000020-scaffold_179; TARA_SAMEA6015835_MAG_00000020-scaffold_180; TARA_SAMEA6015835_MAG_00000020-scaffold_181; TARA_SAMEA6015835_MAG_00000020-scaffold_182; TARA_SAMEA6015835_MAG_00000020-scaffold_183; TARA_SAMEA6015835_MAG_00000020-scaffold_184; TARA_SAMEA6015835_MAG_00000020-scaffold_185; TARA_SAMEA6015835_MAG_00000020-scaffold_186; TARA_SAMEA6015835_MAG_00000020-scaffold_187; TARA_SAMEA6015835_MAG_00000020-scaffold_188; TARA_SAMEA6015835_MAG_00000020-scaffold_189; TARA_SAMEA6015835_MAG_00000020-scaffold_190; TARA_SAMEA6015835_MAG_00000020-scaffold_191; TARA_SAMEA6015835_MAG_00000020-scaffold_192

Compact view

TARA_SAMEA6015835_MAG_00000020-scaffold_2 - Region 1 - resorcinol

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Location: 43,915 - 85,063 nt. (total: 41,149 nt) Show pHMM detection rules used

resorcinol: DarB

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core biosynthetic genes

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TARA_SAMEA6015835_MAG_00000020-scaffold_2 - Region 2 - proteusin

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Location: 106,774 - 117,372 nt. (total: 10,599 nt) Show pHMM detection rules used

Region on contig edge.

proteusin: (PoyD or TIGR03793)

Legend:

core biosynthetic genes

additional biosynthetic genes

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TARA_SAMEA6015835_MAG_00000020-scaffold_5 - Region 1 - hglE-KS

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Location: 6,403 - 58,037 nt. (total: 51,635 nt) Show pHMM detection rules used

hglE-KS: (hglE or hglD)

Legend:

core biosynthetic genes

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transport-related genes

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 6402 - 58037:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6015835_MAG_00000020-scaffold_5_24

PKS_AT (1235..1385): pk

ATSignature: (unknown)

No matches above 50%

minowa: trans-1,2-CPDA

Prediction, score:

trans-1,2-CPDA: 0.0
inactive: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Methylmalonyl-CoA: 0.0
Methoxymalonyl-CoA: 0.0
Malonyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

TARA_SAMEA6015835_MAG_00000020-scaffold_5_26

PKS_AT (587..895): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 70.8%; inactive: 66.7%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 78.8
Methoxymalonyl-CoA: 31.2
Methylmalonyl-CoA: 25.2
inactive: 20.7
CHC-CoA: 17.6
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

TARA_SAMEA6015835_MAG_00000020-scaffold_7 - Region 1 - NRPS

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Location: 14,673 - 58,716 nt. (total: 44,044 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 14672 - 58716:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6015835_MAG_00000020-scaffold_7_31

Search NORINE for peptide: strict or relaxed

AMP-binding (492..889): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

TARA_SAMEA6015835_MAG_00000020-scaffold_9 - Region 1 - terpene

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Location: 36,906 - 58,810 nt. (total: 21,905 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

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TARA_SAMEA6015835_MAG_00000020-scaffold_13 - Region 1 - proteusin

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Location: 1 - 20,481 nt. (total: 20,481 nt) Show pHMM detection rules used

Region on contig edge.

proteusin: (PoyD or TIGR03793)

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

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resistance

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TARA_SAMEA6015835_MAG_00000020-scaffold_15 - Region 1 - CDPS

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Location: 32,165 - 53,325 nt. (total: 21,161 nt) Show pHMM detection rules used

CDPS: (CDPS or cycdipepsynth)

Legend:

core biosynthetic genes

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TARA_SAMEA6015835_MAG_00000020-scaffold_19 - Region 1 - terpene

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Location: 28,572 - 49,384 nt. (total: 20,813 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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TARA_SAMEA6015835_MAG_00000020-scaffold_37 - Region 1 - NRPS-like,T1PKS

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Location: 4,355 - 39,186 nt. (total: 34,832 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 4354 - 39186:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6015835_MAG_00000020-scaffold_37_33

CAL_domain (38..479): pk

minowa: NH2

Prediction, score:

NH2: 28.7
fatty_acid: 17.2
AHBA: 4.0
Acetyl-CoA: 3.7
shikimic_acid: 0.0

PKS_AT (1204..1495): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 95.8%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: inactive

Prediction, score:

inactive: 189.8
Malonyl-CoA: 178.2
Methoxymalonyl-CoA: 59.7
Methylmalonyl-CoA: 47.5
Isobutyryl-CoA: 30.4
Propionyl-CoA: 25.5
Benzoyl-CoA: 22.9
Acetyl-CoA: 11.2
CHC-CoA: 10.6
Ethylmalonyl-CoA: 10.3
2-Methylbutyryl-CoA: 9.7
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
3-Methylbutyryl-CoA: 0.0

TARA_SAMEA6015835_MAG_00000020-scaffold_43 - Region 1 - T3PKS

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Location: 1 - 29,655 nt. (total: 29,655 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

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TARA_SAMEA6015835_MAG_00000020-scaffold_51 - Region 1 - NRPS,T1PKS

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Location: 1 - 32,367 nt. (total: 32,367 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 32367:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal - D-X) + (asn)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

TARA_SAMEA6015835_MAG_00000020-scaffold_51_1

Search NORINE for peptide: strict or relaxed

PKS_AT (204..503): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 87.5%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 163.4
inactive: 134.4
Methylmalonyl-CoA: 45.9
Methoxymalonyl-CoA: 43.9
Isobutyryl-CoA: 37.9
Propionyl-CoA: 32.1
Acetyl-CoA: 19.7
Benzoyl-CoA: 15.8
2-Methylbutyryl-CoA: 12.4
CHC-CoA: 11.5
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Ethylmalonyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

AMP-binding (1717..2125): X

NRPSPredictor2: orn, lys, arg

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DvENiGaItK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 60% (weak)

TARA_SAMEA6015835_MAG_00000020-scaffold_51_2

Search NORINE for peptide: strict or relaxed

AMP-binding (470..872): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DaTKIGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

TARA_SAMEA6015835_MAG_00000020-scaffold_79 - Region 1 - siderophore

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Location: 381 - 17,279 nt. (total: 16,899 nt) Show pHMM detection rules used

siderophore: IucA_IucC

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TARA_SAMEA6015835_MAG_00000020-scaffold_121 - Region 1 - terpene

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Location: 1 - 12,427 nt. (total: 12,427 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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TARA_SAMEA6015835_MAG_00000020-scaffold_142 - Region 1 - lanthipeptide-class-ii

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Location: 1 - 9,241 nt. (total: 9,241 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

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Lanthipeptides

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

TARA_SAMEA6015835_MAG_00000020-scaffold_147 - Region 1 - RRE-containing

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Location: 1 - 8,933 nt. (total: 8,933 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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