CARD22-1_SAMN24292809_MAG_00000014 - 17 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

CARD22-1_SAMN24292809_MAG_00000014-scaffold_4

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	NRPS	156,940	195,501

CARD22-1_SAMN24292809_MAG_00000014-scaffold_5

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	thioamitides	12,456	35,188
Region 5.2	lassopeptide	171,943	185,961

CARD22-1_SAMN24292809_MAG_00000014-scaffold_6

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	phosphonate	1	27,584
Region 6.2	siderophore	30,251	46,778

CARD22-1_SAMN24292809_MAG_00000014-scaffold_7

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	T3PKS	58,973	100,028

CARD22-1_SAMN24292809_MAG_00000014-scaffold_9

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	terpene	50,305	75,565

CARD22-1_SAMN24292809_MAG_00000014-scaffold_10

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	NRPS	73,930	120,223

CARD22-1_SAMN24292809_MAG_00000014-scaffold_17

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	NRPS-like,phosphonate	33,487	102,519

CARD22-1_SAMN24292809_MAG_00000014-scaffold_30

Region	Type	From	To	Most similar known cluster		Similarity
Region 30.1	hserlactone	45,888	60,931

CARD22-1_SAMN24292809_MAG_00000014-scaffold_35

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	NRPS,T1PKS	1	55,401

CARD22-1_SAMN24292809_MAG_00000014-scaffold_41

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	arylpolyene	1	25,927

CARD22-1_SAMN24292809_MAG_00000014-scaffold_51

Region	Type	From	To	Most similar known cluster		Similarity
Region 51.1	phosphonate	808	35,733

CARD22-1_SAMN24292809_MAG_00000014-scaffold_64

Region	Type	From	To	Most similar known cluster		Similarity
Region 64.1	thioamitides	4,935	25,879

CARD22-1_SAMN24292809_MAG_00000014-scaffold_78

Region	Type	From	To	Most similar known cluster		Similarity
Region 78.1	terpene	1,230	17,297

CARD22-1_SAMN24292809_MAG_00000014-scaffold_91

Region	Type	From	To	Most similar known cluster		Similarity
Region 91.1	resorcinol	1	11,668

CARD22-1_SAMN24292809_MAG_00000014-scaffold_94

Region	Type	From	To	Most similar known cluster		Similarity
Region 94.1	ranthipeptide	1	10,543

Region	Type	From	To	Similarity
Region 4.1	NRPS	156,940	195,501
Region 5.1	thioamitides	12,456	35,188
Region 5.2	lassopeptide	171,943	185,961
Region 6.1	phosphonate	1	27,584
Region 6.2	siderophore	30,251	46,778
Region 7.1	T3PKS	58,973	100,028
Region 9.1	terpene	50,305	75,565
Region 10.1	NRPS	73,930	120,223
Region 17.1	NRPS-like,phosphonate	33,487	102,519
Region 30.1	hserlactone	45,888	60,931
Region 35.1	NRPS,T1PKS	1	55,401
Region 41.1	arylpolyene	1	25,927
Region 51.1	phosphonate	808	35,733
Region 64.1	thioamitides	4,935	25,879
Region 78.1	terpene	1,230	17,297
Region 91.1	resorcinol	1	11,668
Region 94.1	ranthipeptide	1	10,543

No secondary metabolite regions were found in these records:: CARD22-1_SAMN24292809_MAG_00000014-scaffold_1; CARD22-1_SAMN24292809_MAG_00000014-scaffold_2; CARD22-1_SAMN24292809_MAG_00000014-scaffold_3; CARD22-1_SAMN24292809_MAG_00000014-scaffold_8; CARD22-1_SAMN24292809_MAG_00000014-scaffold_11; CARD22-1_SAMN24292809_MAG_00000014-scaffold_12; CARD22-1_SAMN24292809_MAG_00000014-scaffold_13; CARD22-1_SAMN24292809_MAG_00000014-scaffold_14; CARD22-1_SAMN24292809_MAG_00000014-scaffold_15; CARD22-1_SAMN24292809_MAG_00000014-scaffold_16; CARD22-1_SAMN24292809_MAG_00000014-scaffold_18; CARD22-1_SAMN24292809_MAG_00000014-scaffold_19; CARD22-1_SAMN24292809_MAG_00000014-scaffold_20; CARD22-1_SAMN24292809_MAG_00000014-scaffold_21; CARD22-1_SAMN24292809_MAG_00000014-scaffold_22; CARD22-1_SAMN24292809_MAG_00000014-scaffold_23; CARD22-1_SAMN24292809_MAG_00000014-scaffold_24; CARD22-1_SAMN24292809_MAG_00000014-scaffold_25; CARD22-1_SAMN24292809_MAG_00000014-scaffold_26; CARD22-1_SAMN24292809_MAG_00000014-scaffold_27; CARD22-1_SAMN24292809_MAG_00000014-scaffold_28; CARD22-1_SAMN24292809_MAG_00000014-scaffold_29; CARD22-1_SAMN24292809_MAG_00000014-scaffold_31; CARD22-1_SAMN24292809_MAG_00000014-scaffold_32; CARD22-1_SAMN24292809_MAG_00000014-scaffold_33; CARD22-1_SAMN24292809_MAG_00000014-scaffold_34; CARD22-1_SAMN24292809_MAG_00000014-scaffold_36; CARD22-1_SAMN24292809_MAG_00000014-scaffold_37; CARD22-1_SAMN24292809_MAG_00000014-scaffold_38; CARD22-1_SAMN24292809_MAG_00000014-scaffold_39; CARD22-1_SAMN24292809_MAG_00000014-scaffold_40; CARD22-1_SAMN24292809_MAG_00000014-scaffold_42; CARD22-1_SAMN24292809_MAG_00000014-scaffold_43; CARD22-1_SAMN24292809_MAG_00000014-scaffold_44; CARD22-1_SAMN24292809_MAG_00000014-scaffold_45; CARD22-1_SAMN24292809_MAG_00000014-scaffold_46; CARD22-1_SAMN24292809_MAG_00000014-scaffold_47; CARD22-1_SAMN24292809_MAG_00000014-scaffold_48; CARD22-1_SAMN24292809_MAG_00000014-scaffold_49; CARD22-1_SAMN24292809_MAG_00000014-scaffold_50; CARD22-1_SAMN24292809_MAG_00000014-scaffold_52; CARD22-1_SAMN24292809_MAG_00000014-scaffold_53; CARD22-1_SAMN24292809_MAG_00000014-scaffold_54; CARD22-1_SAMN24292809_MAG_00000014-scaffold_55; CARD22-1_SAMN24292809_MAG_00000014-scaffold_56; CARD22-1_SAMN24292809_MAG_00000014-scaffold_57; CARD22-1_SAMN24292809_MAG_00000014-scaffold_58; CARD22-1_SAMN24292809_MAG_00000014-scaffold_59; CARD22-1_SAMN24292809_MAG_00000014-scaffold_60; CARD22-1_SAMN24292809_MAG_00000014-scaffold_61; CARD22-1_SAMN24292809_MAG_00000014-scaffold_62; CARD22-1_SAMN24292809_MAG_00000014-scaffold_63; CARD22-1_SAMN24292809_MAG_00000014-scaffold_65; CARD22-1_SAMN24292809_MAG_00000014-scaffold_66; CARD22-1_SAMN24292809_MAG_00000014-scaffold_67; CARD22-1_SAMN24292809_MAG_00000014-scaffold_68; CARD22-1_SAMN24292809_MAG_00000014-scaffold_69; CARD22-1_SAMN24292809_MAG_00000014-scaffold_70; CARD22-1_SAMN24292809_MAG_00000014-scaffold_71; CARD22-1_SAMN24292809_MAG_00000014-scaffold_72; CARD22-1_SAMN24292809_MAG_00000014-scaffold_73; CARD22-1_SAMN24292809_MAG_00000014-scaffold_74; CARD22-1_SAMN24292809_MAG_00000014-scaffold_75; CARD22-1_SAMN24292809_MAG_00000014-scaffold_76; CARD22-1_SAMN24292809_MAG_00000014-scaffold_77; CARD22-1_SAMN24292809_MAG_00000014-scaffold_79; CARD22-1_SAMN24292809_MAG_00000014-scaffold_80; CARD22-1_SAMN24292809_MAG_00000014-scaffold_81; CARD22-1_SAMN24292809_MAG_00000014-scaffold_82; CARD22-1_SAMN24292809_MAG_00000014-scaffold_83; CARD22-1_SAMN24292809_MAG_00000014-scaffold_84; CARD22-1_SAMN24292809_MAG_00000014-scaffold_85; CARD22-1_SAMN24292809_MAG_00000014-scaffold_86; CARD22-1_SAMN24292809_MAG_00000014-scaffold_87; CARD22-1_SAMN24292809_MAG_00000014-scaffold_88; CARD22-1_SAMN24292809_MAG_00000014-scaffold_89; CARD22-1_SAMN24292809_MAG_00000014-scaffold_90; CARD22-1_SAMN24292809_MAG_00000014-scaffold_92; CARD22-1_SAMN24292809_MAG_00000014-scaffold_93; CARD22-1_SAMN24292809_MAG_00000014-scaffold_95; CARD22-1_SAMN24292809_MAG_00000014-scaffold_96; CARD22-1_SAMN24292809_MAG_00000014-scaffold_97; CARD22-1_SAMN24292809_MAG_00000014-scaffold_98; CARD22-1_SAMN24292809_MAG_00000014-scaffold_99; CARD22-1_SAMN24292809_MAG_00000014-scaffold_100; CARD22-1_SAMN24292809_MAG_00000014-scaffold_101; CARD22-1_SAMN24292809_MAG_00000014-scaffold_102; CARD22-1_SAMN24292809_MAG_00000014-scaffold_103; CARD22-1_SAMN24292809_MAG_00000014-scaffold_104

Compact view

CARD22-1_SAMN24292809_MAG_00000014-scaffold_4 - Region 1 - NRPS

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Location: 156,940 - 195,501 nt. (total: 38,562 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

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Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 156939 - 195501:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

CARD22-1_SAMN24292809_MAG_00000014-scaffold_4_155

Search NORINE for peptide: strict or relaxed

AMP-binding (28..449): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DFgYcGGlVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 70% (weak)

AMP-binding (1216..1643): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DmAnlGEVaK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 60% (weak)

CARD22-1_SAMN24292809_MAG_00000014-scaffold_5 - Region 1 - thioamitides

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Location: 12,456 - 35,188 nt. (total: 22,733 nt) Show pHMM detection rules used

thioamitides: ((YcaO or TIGR03882) and TfuA)

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CARD22-1_SAMN24292809_MAG_00000014-scaffold_5 - Region 2 - lassopeptide

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Location: 171,943 - 185,961 nt. (total: 14,019 nt) Show pHMM detection rules used

Region on contig edge.

lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)

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Lasso peptides

Lasso peptide predictions

Lassopeptide(s) for CARD22-1_SAMN24292809_MAG_00000014-scaffold_5_161 - Putative Class II

CARD22-1_SAMN24292809_MAG_00000014-scaffold_5_161 leader / core peptide / cleaved tail: MKSRHVVKKTHLVRLGSVSRLTK - GGRTAPEEFLGEPQQP

Legend:

Red: Putative macrolactam
Purple: Putative cleaved off residues

Lasso peptides

Core peptide predictions

CARD22-1_SAMN24292809_MAG_00000014-scaffold_5_161 - Class II: Cleavage pHMM score: 12.30; RODEO score: 25; Monoisotopic mass: 1693.8 Da; Molecular weight: 1694.8 Da; Number of bridges: 0

CARD22-1_SAMN24292809_MAG_00000014-scaffold_6 - Region 1 - phosphonate

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Location: 1 - 27,584 nt. (total: 27,584 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: phosphonates

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CARD22-1_SAMN24292809_MAG_00000014-scaffold_6 - Region 2 - siderophore

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Location: 30,251 - 46,778 nt. (total: 16,528 nt) Show pHMM detection rules used

siderophore: IucA_IucC

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CARD22-1_SAMN24292809_MAG_00000014-scaffold_7 - Region 1 - T3PKS

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Location: 58,973 - 100,028 nt. (total: 41,056 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

Selected features only

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CARD22-1_SAMN24292809_MAG_00000014-scaffold_9 - Region 1 - terpene

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Location: 50,305 - 75,565 nt. (total: 25,261 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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CARD22-1_SAMN24292809_MAG_00000014-scaffold_10 - Region 1 - NRPS

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Location: 73,930 - 120,223 nt. (total: 46,294 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

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Module view

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 73929 - 120223:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

CARD22-1_SAMN24292809_MAG_00000014-scaffold_10_70

Search NORINE for peptide: strict or relaxed

AMP-binding (20..414): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gLFayanGAK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 50% (weak)

CARD22-1_SAMN24292809_MAG_00000014-scaffold_10_86

Search NORINE for peptide: strict or relaxed

CAL_domain (47..496): pk

minowa: fatty_acid

Prediction, score:

fatty_acid: 27.7
shikimic_acid: 0.0
NH2: 0.0
Acetyl-CoA: 0.0
AHBA: 0.0

AMP-binding (1246..1666): X

NRPSPredictor2: asp, asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DmAnmGEVaK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 60% (weak)

CARD22-1_SAMN24292809_MAG_00000014-scaffold_17 - Region 1 - NRPS-like,phosphonate

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Location: 33,487 - 102,519 nt. (total: 69,033 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
phosphonate: phosphonates

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Detailed domain annotation

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CARD22-1_SAMN24292809_MAG_00000014-scaffold_30 - Region 1 - hserlactone

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Location: 45,888 - 60,931 nt. (total: 15,044 nt) Show pHMM detection rules used

Region on contig edge.

hserlactone: Autoind_synth

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CARD22-1_SAMN24292809_MAG_00000014-scaffold_35 - Region 1 - NRPS,T1PKS

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Location: 1 - 55,401 nt. (total: 55,401 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 55401:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X) + (val) + (X) + (mal) + (cys - NMe-beta-ala) + (mal) + (NMe-beta-ala)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

CARD22-1_SAMN24292809_MAG_00000014-scaffold_35_3

Search NORINE for peptide: strict or relaxed

AMP-binding (542..951): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNigvVWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 70% (weak)

AMP-binding (1607..1998): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: gDtlsSLADK
Nearest Stachelhaus code:: ala-b
Stachelhaus code match:: 60% (weak)

CARD22-1_SAMN24292809_MAG_00000014-scaffold_35_4

Search NORINE for peptide: strict or relaxed

AMP-binding (201..596): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAaFyGCVyK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 70% (weak)

CARD22-1_SAMN24292809_MAG_00000014-scaffold_35_9

Search NORINE for peptide: strict or relaxed

AMP-binding (1038..1443): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: vAiWvsssFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 40% (weak)

CARD22-1_SAMN24292809_MAG_00000014-scaffold_35_10

PKS_AT (538..820): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 57.6
Methylmalonyl-CoA: 41.6
Methoxymalonyl-CoA: 26.6
2-Methylbutyryl-CoA: 17.7
Ethylmalonyl-CoA: 17.6
Propionyl-CoA: 14.1
inactive: 13.9
CHC-CoA: 12.6
Benzoyl-CoA: 12.5
trans-1,2-CPDA: 7.9
Isobutyryl-CoA: 3.8
fatty_acid: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

CARD22-1_SAMN24292809_MAG_00000014-scaffold_35_11

Search NORINE for peptide: strict or relaxed

AMP-binding (515..911): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNvgiIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 70% (weak)

AMP-binding (1620..2005): beta-ala

NRPSPredictor2: beta-ala

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: VDAVhSiADK
Nearest Stachelhaus code:: beta-ala
Stachelhaus code match:: 80% (moderate)

CARD22-1_SAMN24292809_MAG_00000014-scaffold_35_12

PKS_AT (535..820): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 79.2%; inactive: 70.8%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 115.7
Methoxymalonyl-CoA: 64.6
Methylmalonyl-CoA: 61.0
Propionyl-CoA: 46.0
CHC-CoA: 38.5
inactive: 28.4
Ethylmalonyl-CoA: 20.9
2-Methylbutyryl-CoA: 19.2
Isobutyryl-CoA: 18.3
trans-1,2-CPDA: 10.5
fatty_acid: 10.1
Acetyl-CoA: 7.8
Benzoyl-CoA: 5.7
3-Methylbutyryl-CoA: 0.0

CARD22-1_SAMN24292809_MAG_00000014-scaffold_35_13

Search NORINE for peptide: strict or relaxed

AMP-binding (491..876): beta-ala

NRPSPredictor2: beta-ala

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: VDAVhSiADK
Nearest Stachelhaus code:: beta-ala
Stachelhaus code match:: 80% (moderate)

CARD22-1_SAMN24292809_MAG_00000014-scaffold_41 - Region 1 - arylpolyene

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Location: 1 - 25,927 nt. (total: 25,927 nt) Show pHMM detection rules used

Region on contig edge.

arylpolyene: (APE_KS1 or APE_KS2)

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CARD22-1_SAMN24292809_MAG_00000014-scaffold_51 - Region 1 - phosphonate

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Location: 808 - 35,733 nt. (total: 34,926 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: phosphonates

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CARD22-1_SAMN24292809_MAG_00000014-scaffold_64 - Region 1 - thioamitides

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Location: 4,935 - 25,879 nt. (total: 20,945 nt) Show pHMM detection rules used

Region on contig edge.

thioamitides: ((YcaO or TIGR03882) and TfuA)

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CARD22-1_SAMN24292809_MAG_00000014-scaffold_78 - Region 1 - terpene

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Location: 1,230 - 17,297 nt. (total: 16,068 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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CARD22-1_SAMN24292809_MAG_00000014-scaffold_91 - Region 1 - resorcinol

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Location: 1 - 11,668 nt. (total: 11,668 nt) Show pHMM detection rules used

Region on contig edge.

resorcinol: DarB

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CARD22-1_SAMN24292809_MAG_00000014-scaffold_94 - Region 1 - ranthipeptide

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Location: 1 - 10,543 nt. (total: 10,543 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

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