# nhmmer :: search a DNA model or alignment against a DNA database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query file: /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_euk.hmm # target sequence database: - # output directed to file: ssu/ssu.euk.txt # hits tabular output: ssu/ssu.euk.table.txt # show alignments in output: no # sequence reporting threshold: E-value <= 1e-05 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: silva.eukarya [M=1734] Scores for complete hits: E-value score bias Sequence start end Description ------- ------ ----- -------- ----- ----- ----------- 2.9e-85 288.4 5.5 RL|S1|C11970 2495 1774 1.1e-84 286.4 9.8 RL|S1|C16600 438 1179 1.1e-84 286.4 9.9 RL|S1|C12411 437 1179 1.4e-83 282.8 5.5 RL|S1|C610 579 1297 3.1e-83 281.7 9.6 RL|S1|C10560 443 1179 4.3e-83 281.2 10.6 RL|S1|C1410 1061 1816 4.3e-83 281.2 10.6 RL|S1|C17681 18503 19258 3.2e-82 278.3 10.7 RL|S1|C9292 438 1179 3.2e-81 275.0 10.4 RL|S1|C14115 439 1180 5.6e-81 274.2 10.4 RL|S1|C4285 49977 50767 3.8e-80 271.4 12.6 RL|S1|C11048 194512 195267 3.8e-80 271.4 12.6 RL|S1|C4033 2977 2222 4.1e-80 271.3 12.6 RL|S1|C17251 471066 470311 4.1e-80 271.3 12.6 RL|S1|C18841 1005 1760 3e-79 268.4 6.9 RL|S1|C12579 5 715 1.4e-78 266.3 8.1 RL|S1|C11517 4758 4005 2.4e-78 265.5 8.1 RL|S1|C7679 846 1562 2.7e-78 265.3 8.1 RL|S1|C15246 4760 4045 2.7e-78 265.3 8.1 RL|S1|C8891 815 1530 4.2e-78 264.6 15.9 RL|S1|C15554 768535 767785 7.5e-78 263.8 6.2 RL|S1|C328 5361 4646 1.3e-77 263.1 14.5 RL|S1|C3649 54350 55099 1.4e-77 262.9 9.9 RL|S1|C4952 1421 675 1.6e-76 259.4 11.7 RL|S1|C6421 5607 4883 5.9e-76 257.5 5.5 RL|S1|C2427 210467 209746 6.3e-76 257.4 5.6 RL|S1|C8876 408297 407576 1e-75 256.7 5.4 RL|S1|C1061 4816 4095 1.1e-75 256.7 5.5 RL|S1|C15556 911 190 1.1e-75 256.7 5.5 RL|S1|C16306 908 187 3.2e-73 248.5 8.3 RL|S1|C9525 360200 359479 3.4e-73 248.4 8.3 RL|S1|C18954 1227 506 3.5e-73 248.3 8.5 RL|S1|C983 1097 376 1.4e-72 246.3 8.7 RL|S1|C11782 358382 357661 1.1e-69 236.7 9.3 RL|S1|C899 519035 518313 2.3e-69 235.7 9.3 RL|S1|C19147 520338 519617 8.6e-69 233.8 7.0 RL|S1|C9368 1225 504 2.2e-68 232.5 9.3 RL|S1|C8086 490069 489348 6.5e-67 227.6 13.1 RL|S1|C11515 466 1139 6.9e-67 227.5 6.0 RL|S1|C2111 2 641 3.8e-66 225.0 6.2 RL|S1|C17806 1227 506 6.3e-65 221.0 6.3 RL|S1|C16295 1228 507 7.2e-65 220.8 6.0 RL|S1|C274 1224 503 2e-62 212.7 5.1 RL|S1|C6814 38556 38030 5.7e-61 207.9 7.9 RL|S1|C12495 496 1073 8.5e-43 147.7 8.7 RL|S1|C8248 366 17 2.3e-38 133.0 9.2 RL|S1|C17184 512 850 3.4e-28 99.3 2.6 RL|S1|C3681 499 135 8.4e-15 54.9 3.9 RL|S1|C15855 202 50 1.5e-13 50.8 6.3 RL|S1|C9292 976503 976331 6.4e-13 48.7 4.4 RL|S1|C9497 18 198 2.6e-12 46.7 13.3 RL|S1|C15554 768937 768601 9.7e-11 41.5 12.4 RL|S1|C3649 53950 54286 1.5e-10 40.8 6.0 RL|S1|C610 88 482 6.4e-10 38.7 8.3 RL|S1|C17184 120 395 9.5e-09 34.9 1.5 RL|S1|C14419 12 119 1.2e-08 34.5 6.9 RL|S1|C8248 785 433 1.1e-07 31.3 6.7 RL|S1|C4952 1877 1488 5.2e-07 29.1 7.3 RL|S1|C1410 639 995 5.2e-07 29.1 7.3 RL|S1|C17681 18081 18437 5.3e-07 29.1 7.5 RL|S1|C4285 49349 49904 8.7e-07 28.4 6.7 RL|S1|C8005 204 593 1.7e-06 27.4 7.4 RL|S1|C12411 10 359 3.2e-06 26.5 7.2 RL|S1|C16600 10 303 4e-06 26.2 6.8 RL|S1|C10560 10 303 4.2e-06 26.1 6.2 RL|S1|C9292 10 303 6.5e-06 25.5 7.8 RL|S1|C11048 194093 194447 6.5e-06 25.5 7.8 RL|S1|C17251 471485 471131 6.5e-06 25.5 7.8 RL|S1|C18841 586 940 6.5e-06 25.5 7.8 RL|S1|C4033 3396 3042 8e-06 25.2 9.9 RL|S1|C12495 94 419 Annotation for each hit : >> RL|S1|C11970 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 288.4 5.5 2.9e-85 876 1624 .. 2495 1774 .. 2515 1754 .. 2569 0.83 >> RL|S1|C16600 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 286.4 9.8 1.1e-84 862 1627 .. 438 1179 .. 417 1201 .. 1008346 0.84 >> RL|S1|C12411 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 286.4 9.9 1.1e-84 861 1627 .. 437 1179 .. 416 1201 .. 1005863 0.84 >> RL|S1|C610 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 282.8 5.5 1.4e-83 876 1621 .. 579 1297 .] 559 1297 .] 1297 0.83 >> RL|S1|C10560 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 281.7 9.6 3.1e-83 867 1627 .. 443 1179 .. 422 1201 .. 995657 0.85 >> RL|S1|C1410 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 281.2 10.6 4.3e-83 850 1628 .. 1061 1816 .. 1041 1837 .. 87351 0.84 >> RL|S1|C17681 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 281.2 10.6 4.3e-83 850 1628 .. 18503 19258 .. 18483 19279 .. 24870 0.84 >> RL|S1|C9292 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 278.3 10.7 3.2e-82 862 1627 .. 438 1179 .. 417 1201 .. 976922 0.84 >> RL|S1|C14115 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 275.0 10.4 3.2e-81 862 1627 .. 439 1180 .. 418 1202 .. 1152509 0.84 >> RL|S1|C4285 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 274.2 10.4 5.6e-81 850 1665 .. 49977 50767 .. 49956 50798 .. 210921 0.83 >> RL|S1|C11048 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 271.4 12.6 3.8e-80 850 1628 .. 194512 195267 .. 194492 195288 .. 197176 0.85 >> RL|S1|C4033 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 271.4 12.6 3.8e-80 850 1628 .. 2977 2222 .. 2997 2201 .. 338776 0.85 >> RL|S1|C17251 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 271.3 12.6 4.1e-80 850 1628 .. 471066 470311 .. 471077 470290 .. 472090 0.85 >> RL|S1|C18841 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 271.3 12.6 4.1e-80 850 1628 .. 1005 1760 .. 994 1781 .. 38722 0.85 >> RL|S1|C12579 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 268.4 6.9 3e-79 910 1648 .. 5 715 .. 1 753 [. 2827 0.85 >> RL|S1|C11517 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 266.3 8.1 1.4e-78 846 1628 .. 4758 4005 .. 4781 3981 .. 5632 0.83 >> RL|S1|C7679 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 265.5 8.1 2.4e-78 862 1628 .. 846 1562 .. 826 1578 .. 5559 0.83 >> RL|S1|C15246 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 265.3 8.1 2.7e-78 862 1627 .. 4760 4045 .. 4780 4031 .. 5605 0.83 >> RL|S1|C8891 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 265.3 8.1 2.7e-78 862 1627 .. 815 1530 .. 795 1544 .. 5572 0.83 >> RL|S1|C15554 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 264.6 15.9 4.2e-78 852 1626 .. 768535 767785 .. 768555 767777 .. 769323 0.87 >> RL|S1|C328 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 263.8 6.2 7.5e-78 865 1628 .. 5361 4646 .. 5383 4629 .. 307223 0.84 >> RL|S1|C3649 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 263.1 14.5 1.3e-77 850 1624 .. 54350 55099 .. 54330 55108 .. 126892 0.87 >> RL|S1|C4952 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 262.9 9.9 1.4e-77 849 1629 .. 1421 675 .. 1442 653 .. 2083 0.84 >> RL|S1|C6421 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 259.4 11.7 1.6e-76 859 1628 .. 5607 4883 .. 5627 4862 .. 777941 0.83 >> RL|S1|C2427 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 257.5 5.5 5.9e-76 877 1624 .. 210467 209746 .. 210488 209726 .. 210887 0.84 >> RL|S1|C8876 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 257.4 5.6 6.3e-76 877 1624 .. 408297 407576 .. 408318 407561 .. 408720 0.84 >> RL|S1|C1061 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 256.7 5.4 1e-75 877 1624 .. 4816 4095 .. 4837 4076 .. 5742 0.84 >> RL|S1|C15556 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 256.7 5.5 1.1e-75 877 1624 .. 911 190 .. 932 174 .. 169233 0.84 >> RL|S1|C16306 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 256.7 5.5 1.1e-75 877 1624 .. 908 187 .. 929 171 .. 79789 0.84 >> RL|S1|C9525 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 248.5 8.3 3.2e-73 877 1624 .. 360200 359479 .. 360222 359460 .. 436114 0.85 >> RL|S1|C18954 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 248.4 8.3 3.4e-73 877 1624 .. 1227 506 .. 1248 493 .. 118680 0.85 >> RL|S1|C983 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 248.3 8.5 3.5e-73 877 1624 .. 1097 376 .. 1118 365 .. 2060 0.84 >> RL|S1|C11782 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 246.3 8.7 1.4e-72 877 1624 .. 358382 357661 .. 358403 357649 .. 434084 0.84 >> RL|S1|C899 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 236.7 9.3 1.1e-69 876 1624 .. 519035 518313 .. 519063 518300 .. 593983 0.83 >> RL|S1|C19147 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 235.7 9.3 2.3e-69 877 1624 .. 520338 519617 .. 520359 519597 .. 593364 0.85 >> RL|S1|C9368 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 233.8 7.0 8.6e-69 877 1624 .. 1225 504 .. 1246 493 .. 118175 0.84 >> RL|S1|C8086 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 232.5 9.3 2.2e-68 877 1624 .. 490069 489348 .. 490090 489339 .. 565017 0.84 >> RL|S1|C11515 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 227.6 13.1 6.5e-67 850 1547 .. 466 1139 .. 444 1143 .. 1144 0.80 >> RL|S1|C2111 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 227.5 6.0 6.9e-67 959 1629 .. 2 641 .. 1 662 [. 724 0.84 >> RL|S1|C17806 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 225.0 6.2 3.8e-66 877 1624 .. 1227 506 .. 1248 499 .. 119435 0.84 >> RL|S1|C16295 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 221.0 6.3 6.3e-65 877 1624 .. 1228 507 .. 1249 495 .. 135069 0.83 >> RL|S1|C274 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 220.8 6.0 7.2e-65 877 1624 .. 1224 503 .. 1245 488 .. 119339 0.83 >> RL|S1|C6814 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 212.7 5.1 2e-62 1089 1627 .. 38556 38030 .. 38590 38008 .. 46117 0.85 >> RL|S1|C12495 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 207.9 7.9 5.7e-61 856 1453 .. 496 1073 .. 470 1076 .] 1076 0.82 >> RL|S1|C8248 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 147.7 8.7 8.5e-43 849 1212 .. 366 17 .. 387 1 .. 1065 0.88 >> RL|S1|C17184 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 133.0 9.2 2.3e-38 845 1195 .. 512 850 .. 492 851 .] 851 0.86 >> RL|S1|C3681 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 99.3 2.6 3.4e-28 1245 1624 .. 499 135 .. 521 115 .. 564 0.87 >> RL|S1|C15855 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 54.9 3.9 8.4e-15 877 1029 .. 202 50 .. 223 29 .. 1837 0.91 >> RL|S1|C9292 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 50.8 6.3 1.5e-13 863 1035 .. 976503 976331 .. 976531 976262 .. 976922 0.86 >> RL|S1|C9497 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 48.7 4.4 6.4e-13 1475 1654 .. 18 198 .. 2 223 .. 475 0.87 >> RL|S1|C15554 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 46.7 13.3 2.6e-12 288 622 .. 768937 768601 .. 768959 768577 .. 769323 0.69 >> RL|S1|C3649 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 41.5 12.4 9.7e-11 288 622 .. 53950 54286 .. 53928 54307 .. 126892 0.72 >> RL|S1|C610 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 40.8 6.0 1.5e-10 243 615 .. 88 482 .. 67 508 .. 1297 0.63 >> RL|S1|C17184 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 38.7 8.3 6.4e-10 288 563 .. 120 395 .. 105 415 .. 851 0.78 >> RL|S1|C14419 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 34.9 1.5 9.5e-09 1519 1626 .. 12 119 .. 2 141 .. 62920 0.93 >> RL|S1|C8248 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 34.5 6.9 1.2e-08 288 618 .. 785 433 .. 810 412 .. 1065 0.66 >> RL|S1|C4952 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 31.3 6.7 1.1e-07 246 621 .. 1877 1488 .. 1899 1467 .. 2083 0.67 >> RL|S1|C1410 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 29.1 7.3 5.2e-07 286 620 .. 639 995 .. 611 1017 .. 87351 0.64 >> RL|S1|C17681 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 29.1 7.3 5.2e-07 286 620 .. 18081 18437 .. 18053 18459 .. 24870 0.64 >> RL|S1|C4285 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 29.1 7.5 5.3e-07 21 613 .. 49349 49904 .. 49331 49926 .. 210921 0.58 >> RL|S1|C8005 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 28.4 6.7 8.7e-07 246 621 .. 204 593 .. 182 617 .. 757 0.63 >> RL|S1|C12411 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 27.4 7.4 1.7e-06 292 619 .. 10 359 .. 4 381 .. 1005863 0.63 >> RL|S1|C16600 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 26.5 7.2 3.2e-06 292 563 .. 10 303 .. 4 375 .. 1008346 0.60 >> RL|S1|C10560 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 26.2 6.8 4e-06 292 563 .. 10 303 .. 4 375 .. 995657 0.60 >> RL|S1|C9292 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 26.1 6.2 4.2e-06 292 563 .. 10 303 .. 3 379 .. 976922 0.61 >> RL|S1|C11048 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 25.5 7.8 6.5e-06 289 621 .. 194093 194447 .. 194071 194469 .. 197176 0.70 >> RL|S1|C17251 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 25.5 7.8 6.5e-06 289 621 .. 471485 471131 .. 471507 471109 .. 472090 0.70 >> RL|S1|C18841 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 25.5 7.8 6.5e-06 289 621 .. 586 940 .. 564 962 .. 38722 0.70 >> RL|S1|C4033 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 25.5 7.8 6.5e-06 289 621 .. 3396 3042 .. 3418 3020 .. 338776 0.70 >> RL|S1|C12495 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 25.2 9.9 8e-06 287 614 .. 94 419 .. 74 440 .. 1076 0.67 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (1734 nodes) Target sequences: 19485 (310062946 residues searched) Residues passing SSV filter: 7273528 (0.0235); expected (0.02) Residues passing bias filter: 6797392 (0.0219); expected (0.02) Residues passing Vit filter: 706813 (0.00228); expected (0.003) Residues passing Fwd filter: 356074 (0.00115); expected (3e-05) Total number of hits: 70 (0.000129) # CPU time: 68.65u 0.55s 00:01:09.20 Elapsed: 00:00:08.72 # Mc/sec: 61657.01 // [ok]