# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to sq len strand E-value score bias description of target #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- RL|S1|C11970 - silva.eukarya - 876 1624 2495 1774 2515 1754 2569 - 2.9e-85 288.4 5.5 - RL|S1|C16600 - silva.eukarya - 862 1627 438 1179 417 1201 1008346 + 1.1e-84 286.4 9.8 - RL|S1|C12411 - silva.eukarya - 861 1627 437 1179 416 1201 1005863 + 1.1e-84 286.4 9.9 - RL|S1|C610 - silva.eukarya - 876 1621 579 1297 559 1297 1297 + 1.4e-83 282.8 5.5 - RL|S1|C10560 - silva.eukarya - 867 1627 443 1179 422 1201 995657 + 3.1e-83 281.7 9.6 - RL|S1|C1410 - silva.eukarya - 850 1628 1061 1816 1041 1837 87351 + 4.3e-83 281.2 10.6 - RL|S1|C17681 - silva.eukarya - 850 1628 18503 19258 18483 19279 24870 + 4.3e-83 281.2 10.6 - RL|S1|C9292 - silva.eukarya - 862 1627 438 1179 417 1201 976922 + 3.2e-82 278.3 10.7 - RL|S1|C14115 - silva.eukarya - 862 1627 439 1180 418 1202 1152509 + 3.2e-81 275.0 10.4 - RL|S1|C4285 - silva.eukarya - 850 1665 49977 50767 49956 50798 210921 + 5.6e-81 274.2 10.4 - RL|S1|C11048 - silva.eukarya - 850 1628 194512 195267 194492 195288 197176 + 3.8e-80 271.4 12.6 - RL|S1|C4033 - silva.eukarya - 850 1628 2977 2222 2997 2201 338776 - 3.8e-80 271.4 12.6 - RL|S1|C17251 - silva.eukarya - 850 1628 471066 470311 471077 470290 472090 - 4.1e-80 271.3 12.6 - RL|S1|C18841 - silva.eukarya - 850 1628 1005 1760 994 1781 38722 + 4.1e-80 271.3 12.6 - RL|S1|C12579 - silva.eukarya - 910 1648 5 715 1 753 2827 + 3e-79 268.4 6.9 - RL|S1|C11517 - silva.eukarya - 846 1628 4758 4005 4781 3981 5632 - 1.4e-78 266.3 8.1 - RL|S1|C7679 - silva.eukarya - 862 1628 846 1562 826 1578 5559 + 2.4e-78 265.5 8.1 - RL|S1|C15246 - silva.eukarya - 862 1627 4760 4045 4780 4031 5605 - 2.7e-78 265.3 8.1 - RL|S1|C8891 - silva.eukarya - 862 1627 815 1530 795 1544 5572 + 2.7e-78 265.3 8.1 - RL|S1|C15554 - silva.eukarya - 852 1626 768535 767785 768555 767777 769323 - 4.2e-78 264.6 15.9 - RL|S1|C328 - silva.eukarya - 865 1628 5361 4646 5383 4629 307223 - 7.5e-78 263.8 6.2 - RL|S1|C3649 - silva.eukarya - 850 1624 54350 55099 54330 55108 126892 + 1.3e-77 263.1 14.5 - RL|S1|C4952 - silva.eukarya - 849 1629 1421 675 1442 653 2083 - 1.4e-77 262.9 9.9 - RL|S1|C6421 - silva.eukarya - 859 1628 5607 4883 5627 4862 777941 - 1.6e-76 259.4 11.7 - RL|S1|C2427 - silva.eukarya - 877 1624 210467 209746 210488 209726 210887 - 5.9e-76 257.5 5.5 - RL|S1|C8876 - silva.eukarya - 877 1624 408297 407576 408318 407561 408720 - 6.3e-76 257.4 5.6 - RL|S1|C1061 - silva.eukarya - 877 1624 4816 4095 4837 4076 5742 - 1e-75 256.7 5.4 - RL|S1|C15556 - silva.eukarya - 877 1624 911 190 932 174 169233 - 1.1e-75 256.7 5.5 - RL|S1|C16306 - silva.eukarya - 877 1624 908 187 929 171 79789 - 1.1e-75 256.7 5.5 - RL|S1|C9525 - silva.eukarya - 877 1624 360200 359479 360222 359460 436114 - 3.2e-73 248.5 8.3 - RL|S1|C18954 - silva.eukarya - 877 1624 1227 506 1248 493 118680 - 3.4e-73 248.4 8.3 - RL|S1|C983 - silva.eukarya - 877 1624 1097 376 1118 365 2060 - 3.5e-73 248.3 8.5 - RL|S1|C11782 - silva.eukarya - 877 1624 358382 357661 358403 357649 434084 - 1.4e-72 246.3 8.7 - RL|S1|C899 - silva.eukarya - 876 1624 519035 518313 519063 518300 593983 - 1.1e-69 236.7 9.3 - RL|S1|C19147 - silva.eukarya - 877 1624 520338 519617 520359 519597 593364 - 2.3e-69 235.7 9.3 - RL|S1|C9368 - silva.eukarya - 877 1624 1225 504 1246 493 118175 - 8.6e-69 233.8 7.0 - RL|S1|C8086 - silva.eukarya - 877 1624 490069 489348 490090 489339 565017 - 2.2e-68 232.5 9.3 - RL|S1|C11515 - silva.eukarya - 850 1547 466 1139 444 1143 1144 + 6.5e-67 227.6 13.1 - RL|S1|C2111 - silva.eukarya - 959 1629 2 641 1 662 724 + 6.9e-67 227.5 6.0 - RL|S1|C17806 - silva.eukarya - 877 1624 1227 506 1248 499 119435 - 3.8e-66 225.0 6.2 - RL|S1|C16295 - silva.eukarya - 877 1624 1228 507 1249 495 135069 - 6.3e-65 221.0 6.3 - RL|S1|C274 - silva.eukarya - 877 1624 1224 503 1245 488 119339 - 7.2e-65 220.8 6.0 - RL|S1|C6814 - silva.eukarya - 1089 1627 38556 38030 38590 38008 46117 - 2e-62 212.7 5.1 - RL|S1|C12495 - silva.eukarya - 856 1453 496 1073 470 1076 1076 + 5.7e-61 207.9 7.9 - RL|S1|C8248 - silva.eukarya - 849 1212 366 17 387 1 1065 - 8.5e-43 147.7 8.7 - RL|S1|C17184 - silva.eukarya - 845 1195 512 850 492 851 851 + 2.3e-38 133.0 9.2 - RL|S1|C3681 - silva.eukarya - 1245 1624 499 135 521 115 564 - 3.4e-28 99.3 2.6 - RL|S1|C15855 - silva.eukarya - 877 1029 202 50 223 29 1837 - 8.4e-15 54.9 3.9 - RL|S1|C9292 - silva.eukarya - 863 1035 976503 976331 976531 976262 976922 - 1.5e-13 50.8 6.3 - RL|S1|C9497 - silva.eukarya - 1475 1654 18 198 2 223 475 + 6.4e-13 48.7 4.4 - RL|S1|C15554 - silva.eukarya - 288 622 768937 768601 768959 768577 769323 - 2.6e-12 46.7 13.3 - RL|S1|C3649 - silva.eukarya - 288 622 53950 54286 53928 54307 126892 + 9.7e-11 41.5 12.4 - RL|S1|C610 - silva.eukarya - 243 615 88 482 67 508 1297 + 1.5e-10 40.8 6.0 - RL|S1|C17184 - silva.eukarya - 288 563 120 395 105 415 851 + 6.4e-10 38.7 8.3 - RL|S1|C14419 - silva.eukarya - 1519 1626 12 119 2 141 62920 + 9.5e-09 34.9 1.5 - RL|S1|C8248 - silva.eukarya - 288 618 785 433 810 412 1065 - 1.2e-08 34.5 6.9 - RL|S1|C4952 - silva.eukarya - 246 621 1877 1488 1899 1467 2083 - 1.1e-07 31.3 6.7 - RL|S1|C1410 - silva.eukarya - 286 620 639 995 611 1017 87351 + 5.2e-07 29.1 7.3 - RL|S1|C17681 - silva.eukarya - 286 620 18081 18437 18053 18459 24870 + 5.2e-07 29.1 7.3 - RL|S1|C4285 - silva.eukarya - 21 613 49349 49904 49331 49926 210921 + 5.3e-07 29.1 7.5 - RL|S1|C8005 - silva.eukarya - 246 621 204 593 182 617 757 + 8.7e-07 28.4 6.7 - RL|S1|C12411 - silva.eukarya - 292 619 10 359 4 381 1005863 + 1.7e-06 27.4 7.4 - RL|S1|C16600 - silva.eukarya - 292 563 10 303 4 375 1008346 + 3.2e-06 26.5 7.2 - RL|S1|C10560 - silva.eukarya - 292 563 10 303 4 375 995657 + 4e-06 26.2 6.8 - RL|S1|C9292 - silva.eukarya - 292 563 10 303 3 379 976922 + 4.2e-06 26.1 6.2 - RL|S1|C11048 - silva.eukarya - 289 621 194093 194447 194071 194469 197176 + 6.5e-06 25.5 7.8 - RL|S1|C17251 - silva.eukarya - 289 621 471485 471131 471507 471109 472090 - 6.5e-06 25.5 7.8 - RL|S1|C18841 - silva.eukarya - 289 621 586 940 564 962 38722 + 6.5e-06 25.5 7.8 - RL|S1|C4033 - silva.eukarya - 289 621 3396 3042 3418 3020 338776 - 6.5e-06 25.5 7.8 - RL|S1|C12495 - silva.eukarya - 287 614 94 419 74 440 1076 + 8e-06 25.2 9.9 - # # Program: nhmmer # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_euk.hmm # Target file: - # Option settings: nhmmer -o ssu/ssu.euk.txt --tblout ssu/ssu.euk.table.txt --noali -E 1e-05 --cpu 8 /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_euk.hmm - # Current dir: /nfs/cds-shini.ethz.ch/exports/biol_micro_cds_gr_sunagawa/scratch/hans/MG_COURSE_FALL2018/binning_checkm/metag_low_complex # Date: Sat Oct 27 22:13:49 2018 # [ok]