# nhmmer :: search a DNA model or alignment against a DNA database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query file: /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_bacteria.hmm # target sequence database: - # output directed to file: ssu/ssu.bacteria.txt # hits tabular output: ssu/ssu.bacteria.table.txt # show alignments in output: no # sequence reporting threshold: E-value <= 1e-05 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: bacteria [M=1523] Scores for complete hits: E-value score bias Sequence start end Description ------- ------ ----- -------- ----- ----- ----------- 0 1385.0 23.7 RL|S1|C4285 49299 50865 0 1376.9 27.4 RL|S1|C1410 395 1949 0 1376.9 27.4 RL|S1|C17681 17837 19391 0 1373.3 33.2 RL|S1|C11048 193855 195400 0 1373.3 33.2 RL|S1|C17251 471723 470178 0 1373.3 33.2 RL|S1|C18841 348 1893 0 1373.3 33.2 RL|S1|C4033 3634 2089 0 1358.7 38.0 RL|S1|C3649 53711 55238 0 1357.6 37.9 RL|S1|C15554 769175 767648 0 1339.1 25.3 RL|S1|C4952 2073 543 0 1332.8 24.4 RL|S1|C11517 5410 3871 0 1329.6 33.4 RL|S1|C6421 6222 4745 0 1323.3 28.1 RL|S1|C7679 229 1698 0 1323.1 28.2 RL|S1|C15246 5376 3908 0 1323.1 28.2 RL|S1|C8891 199 1667 0 1319.4 24.5 RL|S1|C328 5980 4508 0 1252.8 20.7 RL|S1|C18954 1914 378 0 1252.8 20.7 RL|S1|C9525 360887 359351 0 1246.9 21.4 RL|S1|C983 1784 248 0 1238.2 26.0 RL|S1|C12411 2 1314 0 1237.4 15.5 RL|S1|C1061 5503 3966 0 1237.4 15.5 RL|S1|C15556 1598 61 0 1237.4 15.5 RL|S1|C16306 1595 58 0 1234.0 26.4 RL|S1|C16600 2 1314 0 1232.7 19.9 RL|S1|C9368 1912 376 0 1231.8 21.0 RL|S1|C11782 359069 357533 0 1229.1 26.2 RL|S1|C10560 2 1314 0 1219.3 25.9 RL|S1|C14115 2 1315 0 1203.8 19.3 RL|S1|C17806 1914 378 0 1201.1 25.1 RL|S1|C9292 4 1314 0 1196.6 19.0 RL|S1|C274 1911 376 0 1195.6 19.7 RL|S1|C16295 1915 379 0 1194.4 21.3 RL|S1|C899 519721 518186 0 1182.6 21.7 RL|S1|C8086 490756 489221 0 1182.3 21.7 RL|S1|C19147 521024 519490 0 1107.8 13.3 RL|S1|C610 2 1297 0 1090.7 12.8 RL|S1|C8876 408719 407447 0 1087.0 12.4 RL|S1|C2427 210887 209617 6.8e-307 1024.8 30.3 RL|S1|C11515 22 1144 1.2e-303 1014.0 18.3 RL|S1|C12495 1 1075 2.2e-262 877.4 22.1 RL|S1|C8248 1019 6 5.3e-233 780.1 21.7 RL|S1|C17184 1 851 1.6e-232 778.5 8.1 RL|S1|C11970 2566 1645 4e-227 760.6 9.4 RL|S1|C12579 1 828 1.6e-201 675.8 8.7 RL|S1|C2111 1 724 9.1e-199 666.7 14.6 RL|S1|C15855 888 2 3.6e-180 605.1 9.3 RL|S1|C6814 38569 37895 1.1e-176 593.6 17.3 RL|S1|C8005 9 756 3.4e-165 555.5 17.5 RL|S1|C9292 976922 976297 1.2e-151 510.7 9.3 RL|S1|C9338 93790 94506 6.9e-130 438.6 5.3 RL|S1|C3681 564 8 1.5e-84 288.5 4.6 RL|S1|C12392 424 1 1.9e-73 251.7 11.7 RL|S1|C14755 118 486 1.8e-69 238.5 8.1 RL|S1|C9497 2 306 5.1e-59 203.9 8.6 RL|S1|C12990 313 2 1.2e-54 189.4 5.8 RL|S1|C14419 3 259 7.3e-50 173.5 2.6 RL|S1|C6271 8412 8701 5.3e-45 157.4 4.5 RL|S1|C13557 292 1 8e-44 153.5 5.6 RL|S1|C6523 18230 18492 6.3e-41 143.9 4.9 RL|S1|C14902 18204 18463 5e-40 141.0 4.6 RL|S1|C16304 18206 18462 2.5e-34 122.1 2.2 RL|S1|C1636 241 2 5.2e-33 117.8 2.6 RL|S1|C7556 1638 1823 6.4e-33 117.4 2.7 RL|S1|C19078 1736 1921 1.3e-32 116.4 1.2 RL|S1|C9984 10516 10704 4.9e-32 114.5 1.9 RL|S1|C792 216 36 5.4e-32 114.4 2.0 RL|S1|C10961 225 43 5.8e-32 114.3 2.1 RL|S1|C9012 221 40 5e-31 111.2 5.1 RL|S1|C10727 222608 222806 2.3e-30 109.0 1.5 RL|S1|C10699 175 1 1.3e-29 106.5 3.1 RL|S1|C1599 646416 646599 2.7e-29 105.4 1.4 RL|S1|C9109 170 1 2e-28 102.6 3.4 RL|S1|C11590 270562 270718 3.2e-28 101.9 3.9 RL|S1|C14907 270706 270866 1.2e-27 100.0 1.5 RL|S1|C725 163 2 4.7e-27 98.0 3.4 RL|S1|C3348 237898 238049 4.9e-27 97.9 4.5 RL|S1|C5534 262161 262320 6.9e-27 97.5 1.3 RL|S1|C6878 160 2 3.9e-26 95.0 1.4 RL|S1|C18960 38403 38558 4.5e-26 94.8 1.3 RL|S1|C10080 5464 5627 5.2e-26 94.6 5.2 RL|S1|C12698 222681 222860 1.7e-25 92.9 2.5 RL|S1|C17887 73364 73521 7.3e-25 90.8 2.5 RL|S1|C10143 115409 115565 2.2e-24 89.2 4.0 RL|S1|C16648 143 2 1.4e-23 86.5 1.7 RL|S1|C10539 405237 405384 4.5e-23 84.8 1.3 RL|S1|C16047 36284 36427 5.9e-20 74.5 1.7 RL|S1|C2578 3759 3891 6e-20 74.5 2.1 RL|S1|C16784 135 2 8.9e-20 73.9 4.3 RL|S1|C2025 190880 190993 8.9e-20 73.9 4.3 RL|S1|C5180 115 2 1.3e-13 53.5 0.2 RL|S1|C6956 153 81 1.5e-13 53.3 1.0 RL|S1|C8520 85 18 1.6e-13 53.2 1.2 RL|S1|C3362 97 26 1.9e-13 53.0 0.4 RL|S1|C19054 84 18 4.2e-13 51.8 2.1 RL|S1|C2882 191713 191806 7.5e-13 51.0 0.6 RL|S1|C13093 3099 3167 7.5e-13 51.0 2.0 RL|S1|C1019 94 2 2e-12 49.6 1.0 RL|S1|C19212 41472 41545 2.2e-12 49.4 0.9 RL|S1|C7763 190889 190962 2.6e-12 49.2 0.9 RL|S1|C10327 89 18 2.7e-12 49.1 1.0 RL|S1|C16403 89 17 2.8e-12 49.1 1.1 RL|S1|C10036 72 2 2.8e-12 49.1 0.9 RL|S1|C5871 86 15 3.2e-12 48.9 0.9 RL|S1|C290 19400 19472 4.6e-12 48.4 0.9 RL|S1|C7715 79 7 6e-12 48.0 0.6 RL|S1|C18945 73 4 7e-12 47.8 0.9 RL|S1|C15775 21249 21321 8.5e-12 47.5 0.6 RL|S1|C11820 27716 27785 1e-08 37.3 0.5 RL|S1|C16921 63 1 5.4e-07 31.6 3.1 RL|S1|C4529 898 807 Annotation for each hit : >> RL|S1|C4285 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1385.0 23.7 0 31 1514 .. 49299 50865 .. 49278 50874 .. 210921 0.94 >> RL|S1|C1410 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1376.9 27.4 0 26 1513 .. 395 1949 .. 374 1960 .. 87351 0.95 >> RL|S1|C17681 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1376.9 27.4 0 26 1513 .. 17837 19391 .. 17816 19402 .. 24870 0.95 >> RL|S1|C11048 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1373.3 33.2 0 29 1513 .. 193855 195400 .. 193833 195410 .. 197176 0.95 >> RL|S1|C17251 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1373.3 33.2 0 29 1513 .. 471723 470178 .. 471745 470168 .. 472090 0.95 >> RL|S1|C18841 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1373.3 33.2 0 29 1513 .. 348 1893 .. 326 1903 .. 38722 0.95 >> RL|S1|C4033 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1373.3 33.2 0 29 1513 .. 3634 2089 .. 3656 2079 .. 338776 0.95 >> RL|S1|C3649 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1358.7 38.0 0 33 1514 .. 53711 55238 .. 53689 55247 .. 126892 0.94 >> RL|S1|C15554 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1357.6 37.9 0 25 1514 .. 769175 767648 .. 769196 767639 .. 769323 0.95 >> RL|S1|C4952 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1339.1 25.3 0 36 1513 .. 2073 543 .. 2082 539 .. 2083 0.95 >> RL|S1|C11517 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1332.8 24.4 0 31 1514 .. 5410 3871 .. 5432 3862 .. 5632 0.95 >> RL|S1|C6421 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1329.6 33.4 0 31 1515 .. 6222 4745 .. 6243 4737 .. 777941 0.95 >> RL|S1|C7679 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1323.3 28.1 0 30 1514 .. 229 1698 .. 208 1707 .. 5559 0.96 >> RL|S1|C15246 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1323.1 28.2 0 31 1514 .. 5376 3908 .. 5398 3899 .. 5605 0.96 >> RL|S1|C8891 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1323.1 28.2 0 31 1514 .. 199 1667 .. 177 1676 .. 5572 0.96 >> RL|S1|C328 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1319.4 24.5 0 31 1514 .. 5980 4508 .. 6001 4499 .. 307223 0.96 >> RL|S1|C18954 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1252.8 20.7 0 30 1513 .. 1914 378 .. 1935 367 .. 118680 0.93 >> RL|S1|C9525 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1252.8 20.7 0 30 1513 .. 360887 359351 .. 360908 359340 .. 436114 0.93 >> RL|S1|C983 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1246.9 21.4 0 30 1513 .. 1784 248 .. 1805 237 .. 2060 0.93 >> RL|S1|C12411 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1238.2 26.0 0 235 1514 .. 2 1314 .. 1 1323 [. 1005863 0.97 >> RL|S1|C1061 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1237.4 15.5 0 31 1514 .. 5503 3966 .. 5525 3957 .. 5742 0.93 >> RL|S1|C15556 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1237.4 15.5 0 31 1514 .. 1598 61 .. 1620 52 .. 169233 0.93 >> RL|S1|C16306 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1237.4 15.5 0 31 1514 .. 1595 58 .. 1617 49 .. 79789 0.93 >> RL|S1|C16600 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1234.0 26.4 0 235 1514 .. 2 1314 .. 1 1323 [. 1008346 0.97 >> RL|S1|C9368 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1232.7 19.9 0 30 1513 .. 1912 376 .. 1933 365 .. 118175 0.93 >> RL|S1|C11782 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1231.8 21.0 0 30 1513 .. 359069 357533 .. 359090 357522 .. 434084 0.93 >> RL|S1|C10560 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1229.1 26.2 0 235 1514 .. 2 1314 .. 1 1323 [. 995657 0.97 >> RL|S1|C14115 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1219.3 25.9 0 234 1514 .. 2 1315 .. 1 1324 [. 1152509 0.97 >> RL|S1|C17806 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1203.8 19.3 0 30 1513 .. 1914 378 .. 1935 367 .. 119435 0.93 >> RL|S1|C9292 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1201.1 25.1 0 237 1514 .. 4 1314 .. 1 1323 [. 976922 0.97 >> RL|S1|C274 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1196.6 19.0 0 30 1512 .. 1911 376 .. 1932 364 .. 119339 0.93 >> RL|S1|C16295 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1195.6 19.7 0 30 1513 .. 1915 379 .. 1936 368 .. 135069 0.93 >> RL|S1|C899 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1194.4 21.3 0 30 1512 .. 519721 518186 .. 519742 518174 .. 593983 0.93 >> RL|S1|C8086 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1182.6 21.7 0 30 1512 .. 490756 489221 .. 490777 489209 .. 565017 0.93 >> RL|S1|C19147 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1182.3 21.7 0 31 1512 .. 521024 519490 .. 521046 519478 .. 593364 0.93 >> RL|S1|C610 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1107.8 13.3 0 117 1373 .. 2 1297 .] 1 1297 [] 1297 0.94 >> RL|S1|C8876 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1090.7 12.8 0 259 1514 .. 408719 407447 .. 408720 407438 .. 408720 0.95 >> RL|S1|C2427 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1087.0 12.4 0 261 1514 .. 210887 209617 .. 210887 209608 .. 210887 0.95 >> RL|S1|C11515 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1024.8 30.3 6.8e-307 214 1304 .. 22 1144 .] 2 1144 .] 1144 0.96 >> RL|S1|C12495 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 1014.0 18.3 1.2e-303 161 1212 .. 1 1075 [. 1 1076 [] 1076 0.96 >> RL|S1|C8248 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 877.4 22.1 2.2e-262 32 989 .. 1019 6 .. 1041 1 .. 1065 0.94 >> RL|S1|C17184 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 780.1 21.7 5.3e-233 136 962 .. 1 851 [] 1 851 [] 851 0.96 >> RL|S1|C11970 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 778.5 8.1 1.6e-232 589 1514 .. 2566 1645 .. 2569 1635 .. 2569 0.95 >> RL|S1|C12579 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 760.6 9.4 4e-227 690 1513 .. 1 828 [. 1 838 [. 2827 0.97 >> RL|S1|C2111 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 675.8 8.7 1.6e-201 741 1464 .. 1 724 [] 1 724 [] 724 0.97 >> RL|S1|C15855 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 666.7 14.6 9.1e-199 31 860 .. 888 2 .. 909 1 .. 1837 0.92 >> RL|S1|C6814 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 605.1 9.3 3.6e-180 843 1514 .. 38569 37895 .. 38595 37886 .. 46117 0.96 >> RL|S1|C8005 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 593.6 17.3 1.1e-176 37 731 .. 9 756 .. 2 757 .] 757 0.94 >> RL|S1|C9292 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 555.5 17.5 3.4e-165 253 848 .. 976922 976297 .. 976922 976284 .. 976922 0.96 >> RL|S1|C9338 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 510.7 9.3 1.2e-151 31 690 .. 93790 94506 .. 93768 94507 .] 94507 0.91 >> RL|S1|C3681 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 438.6 5.3 6.9e-130 952 1512 .. 564 8 .. 564 2 .. 564 0.94 >> RL|S1|C12392 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 288.5 4.6 1.5e-84 94 493 .. 424 1 .. 438 1 .. 441 0.89 >> RL|S1|C14755 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 251.7 11.7 1.9e-73 28 363 .. 118 486 .] 97 486 .] 486 0.88 >> RL|S1|C9497 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 238.5 8.1 1.8e-69 1211 1514 .. 2 306 .. 1 316 [. 475 0.98 >> RL|S1|C12990 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 203.9 8.6 5.1e-59 22 321 .. 313 2 .. 333 1 .. 90759 0.86 >> RL|S1|C14419 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 189.4 5.8 1.2e-54 1262 1515 .. 3 259 .. 1 269 [. 62920 0.95 >> RL|S1|C6271 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 173.5 2.6 7.3e-50 30 281 .. 8412 8701 .] 8391 8701 .] 8701 0.84 >> RL|S1|C13557 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 157.4 4.5 5.3e-45 27 274 .. 292 1 .. 312 1 .. 31411 0.82 >> RL|S1|C6523 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 153.5 5.6 8e-44 34 283 .. 18230 18492 .. 18210 18493 .] 18493 0.88 >> RL|S1|C14902 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 143.9 4.9 6.3e-41 34 280 .. 18204 18463 .. 18184 18464 .] 18464 0.88 >> RL|S1|C16304 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 141.0 4.6 5e-40 34 277 .. 18206 18462 .] 18186 18462 .] 18462 0.88 >> RL|S1|C1636 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 122.1 2.2 2.5e-34 31 232 .. 241 2 .. 262 1 .. 818 0.81 >> RL|S1|C7556 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 117.8 2.6 5.2e-33 32 196 .. 1638 1823 .. 1617 1825 .. 1826 0.86 >> RL|S1|C19078 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 117.4 2.7 6.4e-33 32 196 .. 1736 1921 .. 1716 1922 .] 1922 0.86 >> RL|S1|C9984 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 116.4 1.2 1.3e-32 31 197 .. 10516 10704 .. 10495 10721 .. 10725 0.84 >> RL|S1|C792 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 114.5 1.9 4.9e-32 33 197 .. 216 36 .. 237 16 .. 7097 0.85 >> RL|S1|C10961 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 114.4 2.0 5.4e-32 32 198 .. 225 43 .. 246 22 .. 15115 0.84 >> RL|S1|C9012 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 114.3 2.1 5.8e-32 32 197 .. 221 40 .. 241 19 .. 21258 0.85 >> RL|S1|C10727 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 111.2 5.1 5e-31 30 198 .. 222608 222806 .. 222587 222827 .. 222839 0.83 >> RL|S1|C10699 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 109.0 1.5 2.3e-30 31 189 .. 175 1 .. 196 1 .. 5139 0.86 >> RL|S1|C1599 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 106.5 3.1 1.3e-29 27 190 .. 646416 646599 .] 646396 646599 .] 646599 0.85 >> RL|S1|C9109 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 105.4 1.4 2.7e-29 33 186 .. 170 1 .. 192 1 .. 11062 0.85 >> RL|S1|C11590 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 102.6 3.4 2e-28 34 192 .. 270562 270718 .. 270542 270722 .] 270722 0.90 >> RL|S1|C14907 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 101.9 3.9 3.2e-28 34 196 .. 270706 270866 .. 270686 270869 .] 270869 0.90 >> RL|S1|C725 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 100.0 1.5 1.2e-27 31 176 .. 163 2 .. 184 1 .. 23309 0.84 >> RL|S1|C3348 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 98.0 3.4 4.7e-27 34 187 .. 237898 238049 .] 237878 238049 .] 238049 0.90 >> RL|S1|C5534 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 97.9 4.5 4.9e-27 34 195 .. 262161 262320 .. 262141 262321 .] 262321 0.90 >> RL|S1|C6878 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 97.5 1.3 6.9e-27 31 173 .. 160 2 .. 181 1 .. 29465 0.83 >> RL|S1|C18960 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 95.0 1.4 3.9e-26 28 167 .. 38403 38558 .] 38381 38558 .] 38558 0.83 >> RL|S1|C10080 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 94.8 1.3 4.5e-26 30 171 .. 5464 5627 .. 5443 5629 .] 5629 0.82 >> RL|S1|C12698 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 94.6 5.2 5.2e-26 30 179 .. 222681 222860 .. 222660 222863 .] 222863 0.83 >> RL|S1|C17887 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 92.9 2.5 1.7e-25 30 167 .. 73364 73521 .. 73343 73522 .] 73522 0.82 >> RL|S1|C10143 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 90.8 2.5 7.3e-25 28 164 .. 115409 115565 .. 115389 115566 .] 115566 0.82 >> RL|S1|C16648 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 89.2 4.0 2.2e-24 31 166 .. 143 2 .. 165 1 .. 12370 0.84 >> RL|S1|C10539 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 86.5 1.7 1.4e-23 30 157 .. 405237 405384 .. 405217 405387 .] 405387 0.81 >> RL|S1|C16047 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 84.8 1.3 4.5e-23 29 152 .. 36284 36427 .. 36264 36429 .] 36429 0.81 >> RL|S1|C2578 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 74.5 1.7 5.9e-20 31 141 .. 3759 3891 .. 3738 3892 .] 3892 0.80 >> RL|S1|C16784 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 74.5 2.1 6e-20 30 141 .. 135 2 .. 155 1 .. 19634 0.80 >> RL|S1|C2025 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 73.9 4.3 8.9e-20 30 141 .. 190880 190993 .. 190858 190994 .] 190994 0.83 >> RL|S1|C5180 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 73.9 4.3 8.9e-20 30 141 .. 115 2 .. 137 1 .. 19499 0.83 >> RL|S1|C6956 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 53.5 0.2 1.3e-13 32 104 .. 153 81 .. 174 61 .. 3149 0.82 >> RL|S1|C8520 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 53.3 1.0 1.5e-13 35 102 .. 85 18 .. 107 4 .. 10589 0.86 >> RL|S1|C3362 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 53.2 1.2 1.6e-13 31 102 .. 97 26 .. 118 8 .. 6095 0.83 >> RL|S1|C19054 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 53.0 0.4 1.9e-13 35 101 .. 84 18 .. 104 4 .. 1913 0.87 >> RL|S1|C2882 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 51.8 2.1 4.2e-13 30 121 .. 191713 191806 .. 191692 191807 .] 191807 0.79 >> RL|S1|C13093 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 51.0 0.6 7.5e-13 33 101 .. 3099 3167 .] 3079 3167 .] 3167 0.89 >> RL|S1|C1019 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 51.0 2.0 7.5e-13 30 120 .. 94 2 .. 115 1 .. 109826 0.78 >> RL|S1|C19212 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 49.6 1.0 2e-12 30 103 .. 41472 41545 .. 41451 41559 .. 41560 0.82 >> RL|S1|C7763 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 49.4 0.9 2.2e-12 30 103 .. 190889 190962 .. 190868 190975 .. 190976 0.82 >> RL|S1|C10327 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 49.2 0.9 2.6e-12 32 103 .. 89 18 .. 111 5 .. 303 0.84 >> RL|S1|C16403 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 49.1 1.0 2.7e-12 31 103 .. 89 17 .. 111 4 .. 383186 0.83 >> RL|S1|C10036 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 49.1 1.1 2.8e-12 31 101 .. 72 2 .. 94 1 .. 205856 0.85 >> RL|S1|C5871 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 49.1 0.9 2.8e-12 32 103 .. 86 15 .. 108 3 .. 400 0.84 >> RL|S1|C290 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 48.9 0.9 3.2e-12 30 102 .. 19400 19472 .. 19379 19480 .. 19481 0.84 >> RL|S1|C7715 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 48.4 0.9 4.6e-12 29 101 .. 79 7 .. 100 2 .. 21339 0.84 >> RL|S1|C18945 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 48.0 0.6 6e-12 32 101 .. 73 4 .. 95 1 .. 18733 0.87 >> RL|S1|C15775 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 47.8 0.9 7e-12 29 101 .. 21249 21321 .. 21228 21322 .] 21322 0.85 >> RL|S1|C11820 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 47.5 0.6 8.5e-12 32 101 .. 27716 27785 .. 27694 27786 .] 27786 0.87 >> RL|S1|C16921 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 37.3 0.5 1e-08 32 94 .. 63 1 .. 84 1 .. 5590 0.86 >> RL|S1|C4529 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 31.6 3.1 5.4e-07 1424 1515 .. 898 807 .. 901 798 .. 901 0.91 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (1523 nodes) Target sequences: 19485 (310062946 residues searched) Residues passing SSV filter: 6557318 (0.0211); expected (0.02) Residues passing bias filter: 5752409 (0.0186); expected (0.02) Residues passing Vit filter: 435685 (0.00141); expected (0.003) Residues passing Fwd filter: 119371 (0.000385); expected (3e-05) Total number of hits: 110 (0.000246) # CPU time: 56.33u 0.68s 00:00:57.01 Elapsed: 00:00:07.16 # Mc/sec: 65953.33 // 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