# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to sq len strand E-value score bias description of target #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- RL|S1|C4285 - bacteria - 31 1514 49299 50865 49278 50874 210921 + 0 1385.0 23.7 - RL|S1|C1410 - bacteria - 26 1513 395 1949 374 1960 87351 + 0 1376.9 27.4 - RL|S1|C17681 - bacteria - 26 1513 17837 19391 17816 19402 24870 + 0 1376.9 27.4 - RL|S1|C11048 - bacteria - 29 1513 193855 195400 193833 195410 197176 + 0 1373.3 33.2 - RL|S1|C17251 - bacteria - 29 1513 471723 470178 471745 470168 472090 - 0 1373.3 33.2 - RL|S1|C18841 - bacteria - 29 1513 348 1893 326 1903 38722 + 0 1373.3 33.2 - RL|S1|C4033 - bacteria - 29 1513 3634 2089 3656 2079 338776 - 0 1373.3 33.2 - RL|S1|C3649 - bacteria - 33 1514 53711 55238 53689 55247 126892 + 0 1358.7 38.0 - RL|S1|C15554 - bacteria - 25 1514 769175 767648 769196 767639 769323 - 0 1357.6 37.9 - RL|S1|C4952 - bacteria - 36 1513 2073 543 2082 539 2083 - 0 1339.1 25.3 - RL|S1|C11517 - bacteria - 31 1514 5410 3871 5432 3862 5632 - 0 1332.8 24.4 - RL|S1|C6421 - bacteria - 31 1515 6222 4745 6243 4737 777941 - 0 1329.6 33.4 - RL|S1|C7679 - bacteria - 30 1514 229 1698 208 1707 5559 + 0 1323.3 28.1 - RL|S1|C15246 - bacteria - 31 1514 5376 3908 5398 3899 5605 - 0 1323.1 28.2 - RL|S1|C8891 - bacteria - 31 1514 199 1667 177 1676 5572 + 0 1323.1 28.2 - RL|S1|C328 - bacteria - 31 1514 5980 4508 6001 4499 307223 - 0 1319.4 24.5 - RL|S1|C18954 - bacteria - 30 1513 1914 378 1935 367 118680 - 0 1252.8 20.7 - RL|S1|C9525 - bacteria - 30 1513 360887 359351 360908 359340 436114 - 0 1252.8 20.7 - RL|S1|C983 - bacteria - 30 1513 1784 248 1805 237 2060 - 0 1246.9 21.4 - RL|S1|C12411 - bacteria - 235 1514 2 1314 1 1323 1005863 + 0 1238.2 26.0 - RL|S1|C1061 - bacteria - 31 1514 5503 3966 5525 3957 5742 - 0 1237.4 15.5 - RL|S1|C15556 - bacteria - 31 1514 1598 61 1620 52 169233 - 0 1237.4 15.5 - RL|S1|C16306 - bacteria - 31 1514 1595 58 1617 49 79789 - 0 1237.4 15.5 - RL|S1|C16600 - bacteria - 235 1514 2 1314 1 1323 1008346 + 0 1234.0 26.4 - RL|S1|C9368 - bacteria - 30 1513 1912 376 1933 365 118175 - 0 1232.7 19.9 - RL|S1|C11782 - bacteria - 30 1513 359069 357533 359090 357522 434084 - 0 1231.8 21.0 - RL|S1|C10560 - bacteria - 235 1514 2 1314 1 1323 995657 + 0 1229.1 26.2 - RL|S1|C14115 - bacteria - 234 1514 2 1315 1 1324 1152509 + 0 1219.3 25.9 - RL|S1|C17806 - bacteria - 30 1513 1914 378 1935 367 119435 - 0 1203.8 19.3 - RL|S1|C9292 - bacteria - 237 1514 4 1314 1 1323 976922 + 0 1201.1 25.1 - RL|S1|C274 - bacteria - 30 1512 1911 376 1932 364 119339 - 0 1196.6 19.0 - RL|S1|C16295 - bacteria - 30 1513 1915 379 1936 368 135069 - 0 1195.6 19.7 - RL|S1|C899 - bacteria - 30 1512 519721 518186 519742 518174 593983 - 0 1194.4 21.3 - RL|S1|C8086 - bacteria - 30 1512 490756 489221 490777 489209 565017 - 0 1182.6 21.7 - RL|S1|C19147 - bacteria - 31 1512 521024 519490 521046 519478 593364 - 0 1182.3 21.7 - RL|S1|C610 - bacteria - 117 1373 2 1297 1 1297 1297 + 0 1107.8 13.3 - RL|S1|C8876 - bacteria - 259 1514 408719 407447 408720 407438 408720 - 0 1090.7 12.8 - RL|S1|C2427 - bacteria - 261 1514 210887 209617 210887 209608 210887 - 0 1087.0 12.4 - RL|S1|C11515 - bacteria - 214 1304 22 1144 2 1144 1144 + 6.8e-307 1024.8 30.3 - RL|S1|C12495 - bacteria - 161 1212 1 1075 1 1076 1076 + 1.2e-303 1014.0 18.3 - RL|S1|C8248 - bacteria - 32 989 1019 6 1041 1 1065 - 2.2e-262 877.4 22.1 - RL|S1|C17184 - bacteria - 136 962 1 851 1 851 851 + 5.3e-233 780.1 21.7 - RL|S1|C11970 - bacteria - 589 1514 2566 1645 2569 1635 2569 - 1.6e-232 778.5 8.1 - RL|S1|C12579 - bacteria - 690 1513 1 828 1 838 2827 + 4e-227 760.6 9.4 - RL|S1|C2111 - bacteria - 741 1464 1 724 1 724 724 + 1.6e-201 675.8 8.7 - RL|S1|C15855 - bacteria - 31 860 888 2 909 1 1837 - 9.1e-199 666.7 14.6 - RL|S1|C6814 - bacteria - 843 1514 38569 37895 38595 37886 46117 - 3.6e-180 605.1 9.3 - RL|S1|C8005 - bacteria - 37 731 9 756 2 757 757 + 1.1e-176 593.6 17.3 - RL|S1|C9292 - bacteria - 253 848 976922 976297 976922 976284 976922 - 3.4e-165 555.5 17.5 - RL|S1|C9338 - bacteria - 31 690 93790 94506 93768 94507 94507 + 1.2e-151 510.7 9.3 - RL|S1|C3681 - bacteria - 952 1512 564 8 564 2 564 - 6.9e-130 438.6 5.3 - RL|S1|C12392 - bacteria - 94 493 424 1 438 1 441 - 1.5e-84 288.5 4.6 - RL|S1|C14755 - bacteria - 28 363 118 486 97 486 486 + 1.9e-73 251.7 11.7 - RL|S1|C9497 - bacteria - 1211 1514 2 306 1 316 475 + 1.8e-69 238.5 8.1 - RL|S1|C12990 - bacteria - 22 321 313 2 333 1 90759 - 5.1e-59 203.9 8.6 - RL|S1|C14419 - bacteria - 1262 1515 3 259 1 269 62920 + 1.2e-54 189.4 5.8 - RL|S1|C6271 - bacteria - 30 281 8412 8701 8391 8701 8701 + 7.3e-50 173.5 2.6 - RL|S1|C13557 - bacteria - 27 274 292 1 312 1 31411 - 5.3e-45 157.4 4.5 - RL|S1|C6523 - bacteria - 34 283 18230 18492 18210 18493 18493 + 8e-44 153.5 5.6 - RL|S1|C14902 - bacteria - 34 280 18204 18463 18184 18464 18464 + 6.3e-41 143.9 4.9 - RL|S1|C16304 - bacteria - 34 277 18206 18462 18186 18462 18462 + 5e-40 141.0 4.6 - RL|S1|C1636 - bacteria - 31 232 241 2 262 1 818 - 2.5e-34 122.1 2.2 - RL|S1|C7556 - bacteria - 32 196 1638 1823 1617 1825 1826 + 5.2e-33 117.8 2.6 - RL|S1|C19078 - bacteria - 32 196 1736 1921 1716 1922 1922 + 6.4e-33 117.4 2.7 - RL|S1|C9984 - bacteria - 31 197 10516 10704 10495 10721 10725 + 1.3e-32 116.4 1.2 - RL|S1|C792 - bacteria - 33 197 216 36 237 16 7097 - 4.9e-32 114.5 1.9 - RL|S1|C10961 - bacteria - 32 198 225 43 246 22 15115 - 5.4e-32 114.4 2.0 - RL|S1|C9012 - bacteria - 32 197 221 40 241 19 21258 - 5.8e-32 114.3 2.1 - RL|S1|C10727 - bacteria - 30 198 222608 222806 222587 222827 222839 + 5e-31 111.2 5.1 - RL|S1|C10699 - bacteria - 31 189 175 1 196 1 5139 - 2.3e-30 109.0 1.5 - RL|S1|C1599 - bacteria - 27 190 646416 646599 646396 646599 646599 + 1.3e-29 106.5 3.1 - RL|S1|C9109 - bacteria - 33 186 170 1 192 1 11062 - 2.7e-29 105.4 1.4 - RL|S1|C11590 - bacteria - 34 192 270562 270718 270542 270722 270722 + 2e-28 102.6 3.4 - RL|S1|C14907 - bacteria - 34 196 270706 270866 270686 270869 270869 + 3.2e-28 101.9 3.9 - RL|S1|C725 - bacteria - 31 176 163 2 184 1 23309 - 1.2e-27 100.0 1.5 - RL|S1|C3348 - bacteria - 34 187 237898 238049 237878 238049 238049 + 4.7e-27 98.0 3.4 - RL|S1|C5534 - bacteria - 34 195 262161 262320 262141 262321 262321 + 4.9e-27 97.9 4.5 - RL|S1|C6878 - bacteria - 31 173 160 2 181 1 29465 - 6.9e-27 97.5 1.3 - RL|S1|C18960 - bacteria - 28 167 38403 38558 38381 38558 38558 + 3.9e-26 95.0 1.4 - RL|S1|C10080 - bacteria - 30 171 5464 5627 5443 5629 5629 + 4.5e-26 94.8 1.3 - RL|S1|C12698 - bacteria - 30 179 222681 222860 222660 222863 222863 + 5.2e-26 94.6 5.2 - RL|S1|C17887 - bacteria - 30 167 73364 73521 73343 73522 73522 + 1.7e-25 92.9 2.5 - RL|S1|C10143 - bacteria - 28 164 115409 115565 115389 115566 115566 + 7.3e-25 90.8 2.5 - RL|S1|C16648 - bacteria - 31 166 143 2 165 1 12370 - 2.2e-24 89.2 4.0 - RL|S1|C10539 - bacteria - 30 157 405237 405384 405217 405387 405387 + 1.4e-23 86.5 1.7 - RL|S1|C16047 - bacteria - 29 152 36284 36427 36264 36429 36429 + 4.5e-23 84.8 1.3 - RL|S1|C2578 - bacteria - 31 141 3759 3891 3738 3892 3892 + 5.9e-20 74.5 1.7 - RL|S1|C16784 - bacteria - 30 141 135 2 155 1 19634 - 6e-20 74.5 2.1 - RL|S1|C2025 - bacteria - 30 141 190880 190993 190858 190994 190994 + 8.9e-20 73.9 4.3 - RL|S1|C5180 - bacteria - 30 141 115 2 137 1 19499 - 8.9e-20 73.9 4.3 - RL|S1|C6956 - bacteria - 32 104 153 81 174 61 3149 - 1.3e-13 53.5 0.2 - RL|S1|C8520 - bacteria - 35 102 85 18 107 4 10589 - 1.5e-13 53.3 1.0 - RL|S1|C3362 - bacteria - 31 102 97 26 118 8 6095 - 1.6e-13 53.2 1.2 - RL|S1|C19054 - bacteria - 35 101 84 18 104 4 1913 - 1.9e-13 53.0 0.4 - RL|S1|C2882 - bacteria - 30 121 191713 191806 191692 191807 191807 + 4.2e-13 51.8 2.1 - RL|S1|C13093 - bacteria - 33 101 3099 3167 3079 3167 3167 + 7.5e-13 51.0 0.6 - RL|S1|C1019 - bacteria - 30 120 94 2 115 1 109826 - 7.5e-13 51.0 2.0 - RL|S1|C19212 - bacteria - 30 103 41472 41545 41451 41559 41560 + 2e-12 49.6 1.0 - RL|S1|C7763 - bacteria - 30 103 190889 190962 190868 190975 190976 + 2.2e-12 49.4 0.9 - RL|S1|C10327 - bacteria - 32 103 89 18 111 5 303 - 2.6e-12 49.2 0.9 - RL|S1|C16403 - bacteria - 31 103 89 17 111 4 383186 - 2.7e-12 49.1 1.0 - RL|S1|C10036 - bacteria - 31 101 72 2 94 1 205856 - 2.8e-12 49.1 1.1 - RL|S1|C5871 - bacteria - 32 103 86 15 108 3 400 - 2.8e-12 49.1 0.9 - RL|S1|C290 - bacteria - 30 102 19400 19472 19379 19480 19481 + 3.2e-12 48.9 0.9 - RL|S1|C7715 - bacteria - 29 101 79 7 100 2 21339 - 4.6e-12 48.4 0.9 - RL|S1|C18945 - bacteria - 32 101 73 4 95 1 18733 - 6e-12 48.0 0.6 - RL|S1|C15775 - bacteria - 29 101 21249 21321 21228 21322 21322 + 7e-12 47.8 0.9 - RL|S1|C11820 - bacteria - 32 101 27716 27785 27694 27786 27786 + 8.5e-12 47.5 0.6 - RL|S1|C16921 - bacteria - 32 94 63 1 84 1 5590 - 1e-08 37.3 0.5 - RL|S1|C4529 - bacteria - 1424 1515 898 807 901 798 901 - 5.4e-07 31.6 3.1 - # # Program: nhmmer # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_bacteria.hmm # Target file: - # Option settings: nhmmer -o ssu/ssu.bacteria.txt --tblout ssu/ssu.bacteria.table.txt --noali -E 1e-05 --cpu 8 /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_bacteria.hmm - # Current dir: /nfs/cds-shini.ethz.ch/exports/biol_micro_cds_gr_sunagawa/scratch/hans/MG_COURSE_FALL2018/binning_checkm/metag_low_complex # Date: Sat Oct 27 22:13:34 2018 # [ok]