# nhmmer :: search a DNA model or alignment against a DNA database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query file: /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_archaea.hmm # target sequence database: - # output directed to file: ssu/ssu.archaea.txt # hits tabular output: ssu/ssu.archaea.table.txt # show alignments in output: no # sequence reporting threshold: E-value <= 1e-05 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: archaea [M=1381] Scores for complete hits: E-value score bias Sequence start end Description ------- ------ ----- -------- ----- ----- ----------- 2.9e-219 734.3 20.7 RL|S1|C4285 49313 50859 6.5e-219 733.1 34.9 RL|S1|C15554 769155 767654 2.4e-216 724.6 34.1 RL|S1|C3649 53723 55232 2.1e-214 718.2 21.8 RL|S1|C328 5966 4514 2.7e-214 717.8 25.7 RL|S1|C15246 5362 3914 2.7e-214 717.8 25.7 RL|S1|C8891 213 1661 2.8e-214 717.8 25.7 RL|S1|C7679 244 1692 5.6e-213 713.5 25.1 RL|S1|C1410 414 1944 5.6e-213 713.5 25.1 RL|S1|C17681 17856 19386 2.7e-212 711.2 30.2 RL|S1|C11048 193871 195395 2.7e-212 711.2 30.2 RL|S1|C17251 471707 470183 2.7e-212 711.2 30.2 RL|S1|C18841 364 1888 2.7e-212 711.2 30.2 RL|S1|C4033 3618 2094 1.5e-208 698.8 18.0 RL|S1|C18954 1899 383 1.5e-208 698.8 18.0 RL|S1|C9525 360872 359356 1.3e-207 695.8 18.5 RL|S1|C983 1768 253 3.4e-207 694.3 30.1 RL|S1|C6421 6208 4752 1.1e-204 686.0 16.9 RL|S1|C9368 1897 381 1.5e-203 682.3 18.2 RL|S1|C11782 359053 357538 1.8e-202 678.7 13.8 RL|S1|C1061 5489 3973 1.8e-202 678.7 13.8 RL|S1|C15556 1584 68 1.8e-202 678.7 13.8 RL|S1|C16306 1581 65 3.1e-202 677.9 24.8 RL|S1|C16600 2 1308 5e-202 677.2 24.4 RL|S1|C12411 2 1308 7.5e-202 676.6 24.4 RL|S1|C10560 2 1308 1.8e-199 668.8 11.9 RL|S1|C610 2 1297 5.1e-199 667.2 16.8 RL|S1|C17806 1899 383 6.6e-199 666.9 24.1 RL|S1|C14115 3 1309 7e-199 666.8 22.4 RL|S1|C4952 2064 548 2.2e-198 665.2 24.3 RL|S1|C11517 5397 3877 2.3e-196 658.5 23.6 RL|S1|C9292 3 1308 5.2e-196 657.3 16.5 RL|S1|C274 1896 380 5.7e-196 657.2 17.0 RL|S1|C16295 1900 384 4.3e-194 651.0 18.2 RL|S1|C899 519705 518190 2.9e-191 641.6 18.7 RL|S1|C8086 490740 489225 7.7e-191 640.2 19.0 RL|S1|C19147 521009 519494 1e-180 606.7 11.5 RL|S1|C8876 408719 407454 1e-179 603.4 11.1 RL|S1|C2427 210887 209624 4.4e-173 581.4 28.2 RL|S1|C11515 29 1143 5.8e-160 538.0 16.3 RL|S1|C12495 3 1075 8.9e-147 494.3 7.7 RL|S1|C11970 2564 1651 5.5e-132 445.3 9.3 RL|S1|C12579 3 823 6.4e-127 428.6 19.9 RL|S1|C8248 976 35 6.6e-125 421.9 20.3 RL|S1|C17184 1 849 2.2e-115 390.4 6.3 RL|S1|C2111 1 689 1.9e-105 357.4 8.7 RL|S1|C6814 38569 37901 4.3e-97 329.8 12.7 RL|S1|C15855 874 1 2.6e-75 257.7 16.1 RL|S1|C9292 976921 976298 2.9e-75 257.5 4.6 RL|S1|C3681 552 13 1.3e-65 225.6 16.3 RL|S1|C8005 17 754 1.7e-65 225.2 7.5 RL|S1|C9338 93804 94496 1.2e-35 126.4 6.4 RL|S1|C9497 2 300 5e-35 124.3 3.9 RL|S1|C12392 428 74 1.9e-28 102.6 4.2 RL|S1|C14419 3 252 6.5e-25 90.8 2.9 RL|S1|C6271 8427 8699 1.7e-24 89.4 12.1 RL|S1|C14755 135 481 7e-23 84.1 4.4 RL|S1|C6523 18241 18492 1.4e-21 79.7 10.2 RL|S1|C12990 291 17 4.9e-21 78.0 3.8 RL|S1|C14902 18215 18462 1.6e-20 76.3 3.5 RL|S1|C16304 18217 18460 4.4e-20 74.8 4.9 RL|S1|C13557 274 2 9.5e-14 53.9 2.3 RL|S1|C1636 227 3 3.8e-13 51.9 1.6 RL|S1|C9984 10529 10707 1.6e-11 46.5 4.2 RL|S1|C10727 222622 222834 1.3e-10 43.4 2.7 RL|S1|C14907 270717 270868 3.3e-10 42.1 2.3 RL|S1|C11590 270573 270719 2.9e-09 39.0 2.7 RL|S1|C5534 262172 262321 1e-08 37.2 2.1 RL|S1|C3348 237909 238048 2.3e-08 36.0 2.2 RL|S1|C10961 213 9 2.3e-08 36.0 2.1 RL|S1|C9012 208 6 4.5e-08 35.1 0.9 RL|S1|C792 204 33 4.4e-07 31.8 2.6 RL|S1|C7556 1650 1823 5.9e-07 31.4 2.7 RL|S1|C19078 1748 1920 1.8e-06 29.7 3.6 RL|S1|C12698 222696 222860 2.7e-06 29.2 3.8 RL|S1|C1599 646433 646597 2.9e-06 29.1 1.2 RL|S1|C10699 162 3 8e-06 27.6 1.4 RL|S1|C9109 159 11 8.8e-06 27.5 2.9 RL|S1|C10080 5478 5629 Annotation for each hit : >> RL|S1|C4285 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 734.3 20.7 2.9e-219 10 1378 .. 49313 50859 .. 49305 50862 .. 210921 0.91 >> RL|S1|C15554 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 733.1 34.9 6.5e-219 10 1378 .. 769155 767654 .. 769166 767651 .. 769323 0.92 >> RL|S1|C3649 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 724.6 34.1 2.4e-216 10 1378 .. 53723 55232 .. 53715 55235 .. 126892 0.92 >> RL|S1|C328 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 718.2 21.8 2.1e-214 10 1378 .. 5966 4514 .. 5974 4511 .. 307223 0.92 >> RL|S1|C15246 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 717.8 25.7 2.7e-214 10 1378 .. 5362 3914 .. 5371 3911 .. 5605 0.91 >> RL|S1|C8891 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 717.8 25.7 2.7e-214 10 1378 .. 213 1661 .. 204 1664 .. 5572 0.91 >> RL|S1|C7679 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 717.8 25.7 2.8e-214 10 1378 .. 244 1692 .. 236 1695 .. 5559 0.91 >> RL|S1|C1410 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 713.5 25.1 5.6e-213 10 1378 .. 414 1944 .. 406 1947 .. 87351 0.90 >> RL|S1|C17681 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 713.5 25.1 5.6e-213 10 1378 .. 17856 19386 .. 17848 19389 .. 24870 0.90 >> RL|S1|C11048 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 711.2 30.2 2.7e-212 10 1378 .. 193871 195395 .. 193863 195398 .. 197176 0.89 >> RL|S1|C17251 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 711.2 30.2 2.7e-212 10 1378 .. 471707 470183 .. 471715 470180 .. 472090 0.89 >> RL|S1|C18841 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 711.2 30.2 2.7e-212 10 1378 .. 364 1888 .. 356 1891 .. 38722 0.89 >> RL|S1|C4033 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 711.2 30.2 2.7e-212 10 1378 .. 3618 2094 .. 3626 2091 .. 338776 0.89 >> RL|S1|C18954 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 698.8 18.0 1.5e-208 10 1378 .. 1899 383 .. 1907 380 .. 118680 0.91 >> RL|S1|C9525 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 698.8 18.0 1.5e-208 10 1378 .. 360872 359356 .. 360880 359353 .. 436114 0.91 >> RL|S1|C983 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 695.8 18.5 1.3e-207 11 1378 .. 1768 253 .. 1776 250 .. 2060 0.91 >> RL|S1|C6421 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 694.3 30.1 3.4e-207 10 1378 .. 6208 4752 .. 6216 4749 .. 777941 0.91 >> RL|S1|C9368 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 686.0 16.9 1.1e-204 10 1378 .. 1897 381 .. 1905 378 .. 118175 0.91 >> RL|S1|C11782 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 682.3 18.2 1.5e-203 11 1378 .. 359053 357538 .. 359061 357535 .. 434084 0.91 >> RL|S1|C1061 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 678.7 13.8 1.8e-202 10 1377 .. 5489 3973 .. 5497 3969 .. 5742 0.91 >> RL|S1|C15556 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 678.7 13.8 1.8e-202 10 1377 .. 1584 68 .. 1592 64 .. 169233 0.91 >> RL|S1|C16306 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 678.7 13.8 1.8e-202 10 1377 .. 1581 65 .. 1589 61 .. 79789 0.91 >> RL|S1|C16600 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 677.9 24.8 3.1e-202 192 1378 .. 2 1308 .. 1 1311 [. 1008346 0.93 >> RL|S1|C12411 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 677.2 24.4 5e-202 192 1378 .. 2 1308 .. 1 1311 [. 1005863 0.93 >> RL|S1|C10560 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 676.6 24.4 7.5e-202 192 1378 .. 2 1308 .. 1 1311 [. 995657 0.94 >> RL|S1|C610 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 668.8 11.9 1.8e-199 65 1272 .. 2 1297 .] 1 1297 [] 1297 0.94 >> RL|S1|C17806 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 667.2 16.8 5.1e-199 10 1378 .. 1899 383 .. 1907 380 .. 119435 0.91 >> RL|S1|C14115 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 666.9 24.1 6.6e-199 192 1378 .. 3 1309 .. 1 1312 [. 1152509 0.94 >> RL|S1|C4952 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 666.8 22.4 7e-199 10 1378 .. 2064 548 .. 2070 545 .. 2083 0.90 >> RL|S1|C11517 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 665.2 24.3 2.2e-198 9 1378 .. 5397 3877 .. 5404 3874 .. 5632 0.90 >> RL|S1|C9292 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 658.5 23.6 2.3e-196 193 1378 .. 3 1308 .. 1 1311 [. 976922 0.94 >> RL|S1|C274 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 657.3 16.5 5.2e-196 10 1378 .. 1896 380 .. 1904 377 .. 119339 0.91 >> RL|S1|C16295 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 657.2 17.0 5.7e-196 10 1378 .. 1900 384 .. 1908 381 .. 135069 0.91 >> RL|S1|C899 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 651.0 18.2 4.3e-194 11 1378 .. 519705 518190 .. 519713 518187 .. 593983 0.90 >> RL|S1|C8086 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 641.6 18.7 2.9e-191 11 1378 .. 490740 489225 .. 490748 489222 .. 565017 0.90 >> RL|S1|C19147 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 640.2 19.0 7.7e-191 11 1378 .. 521009 519494 .. 521017 519491 .. 593364 0.90 >> RL|S1|C8876 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 606.7 11.5 1e-180 216 1377 .. 408719 407454 .. 408720 407450 .. 408720 0.92 >> RL|S1|C2427 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 603.4 11.1 1e-179 218 1377 .. 210887 209624 .. 210887 209620 .. 210887 0.92 >> RL|S1|C11515 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 581.4 28.2 4.4e-173 178 1202 .. 29 1143 .. 9 1144 .] 1144 0.93 >> RL|S1|C12495 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 538.0 16.3 5.8e-160 111 1116 .. 3 1075 .. 1 1076 [] 1076 0.91 >> RL|S1|C11970 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 494.3 7.7 8.9e-147 511 1378 .. 2564 1651 .. 2568 1648 .. 2569 0.92 >> RL|S1|C12579 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 445.3 9.3 5.5e-132 611 1378 .. 3 823 .. 1 826 [. 2827 0.92 >> RL|S1|C8248 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 428.6 19.9 6.4e-127 41 886 .. 976 35 .. 1004 14 .. 1065 0.94 >> RL|S1|C17184 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 421.9 20.3 6.6e-125 84 886 .. 1 849 [. 1 851 [] 851 0.93 >> RL|S1|C2111 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 390.4 6.3 2.2e-115 661 1329 .. 1 689 [. 1 710 [. 724 0.90 >> RL|S1|C6814 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 357.4 8.7 1.9e-105 768 1378 .. 38569 37901 .. 38589 37898 .. 46117 0.91 >> RL|S1|C15855 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 329.8 12.7 4.3e-97 10 786 .. 874 1 .. 882 1 .. 1837 0.92 >> RL|S1|C9292 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 257.7 16.1 2.6e-75 211 772 .. 976921 976298 .. 976922 976287 .. 976922 0.94 >> RL|S1|C3681 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 257.5 4.6 2.9e-75 889 1377 .. 552 13 .. 564 9 .. 564 0.86 >> RL|S1|C8005 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 225.6 16.3 1.3e-65 10 649 .. 17 754 .. 10 756 .. 757 0.89 >> RL|S1|C9338 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 225.2 7.5 1.7e-65 10 599 .. 93804 94496 .. 93796 94505 .. 94507 0.93 >> RL|S1|C9497 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 126.4 6.4 1.2e-35 1115 1378 .. 2 300 .. 1 303 [. 475 0.88 >> RL|S1|C12392 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 124.3 3.9 5e-35 56 367 .. 428 74 .. 437 20 .. 441 0.85 >> RL|S1|C14419 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 102.6 4.2 1.9e-28 1161 1378 .. 3 252 .. 1 255 [. 62920 0.95 >> RL|S1|C6271 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 90.8 2.9 6.5e-25 10 236 .. 8427 8699 .. 8416 8701 .] 8701 0.86 >> RL|S1|C14755 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 89.4 12.1 1.7e-24 10 315 .. 135 481 .. 127 486 .] 486 0.87 >> RL|S1|C6523 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 84.1 4.4 7e-23 10 240 .. 18241 18492 .. 18230 18493 .] 18493 0.87 >> RL|S1|C12990 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 79.7 10.2 1.4e-21 9 263 .. 291 17 .. 299 4 .. 90759 0.88 >> RL|S1|C14902 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 78.0 3.8 4.9e-21 10 236 .. 18215 18462 .. 18204 18464 .] 18464 0.87 >> RL|S1|C16304 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 76.3 3.5 1.6e-20 10 232 .. 18217 18460 .. 18206 18462 .] 18462 0.87 >> RL|S1|C13557 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 74.8 4.9 4.4e-20 10 230 .. 274 2 .. 283 1 .. 31411 0.90 >> RL|S1|C1636 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 53.9 2.3 9.5e-14 10 188 .. 227 3 .. 237 1 .. 818 0.81 >> RL|S1|C9984 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 51.9 1.6 3.8e-13 9 148 .. 10529 10707 .. 10520 10719 .. 10725 0.90 >> RL|S1|C10727 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 46.5 4.2 1.6e-11 9 176 .. 222622 222834 .. 222614 222839 .] 222839 0.89 >> RL|S1|C14907 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 43.4 2.7 1.3e-10 10 146 .. 270717 270868 .. 270706 270869 .] 270869 0.91 >> RL|S1|C11590 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 42.1 2.3 3.3e-10 10 141 .. 270573 270719 .. 270562 270722 .] 270722 0.90 >> RL|S1|C5534 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 39.0 2.7 2.9e-09 10 144 .. 262172 262321 .] 262161 262321 .] 262321 0.91 >> RL|S1|C3348 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 37.2 2.1 1e-08 10 134 .. 237909 238048 .. 237898 238049 .] 238049 0.90 >> RL|S1|C10961 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 36.0 2.2 2.3e-08 9 181 .. 213 9 .. 222 4 .. 15115 0.87 >> RL|S1|C9012 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 36.0 2.1 2.3e-08 10 180 .. 208 6 .. 218 2 .. 21258 0.86 >> RL|S1|C792 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 35.1 0.9 4.5e-08 10 148 .. 204 33 .. 214 8 .. 7097 0.89 >> RL|S1|C7556 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 31.8 2.6 4.4e-07 9 144 .. 1650 1823 .. 1642 1826 .] 1826 0.92 >> RL|S1|C19078 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 31.4 2.7 5.9e-07 9 143 .. 1748 1920 .. 1740 1922 .] 1922 0.92 >> RL|S1|C12698 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 29.7 3.6 1.8e-06 10 127 .. 222696 222860 .. 222687 222863 .] 222863 0.92 >> RL|S1|C1599 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 29.2 3.8 2.7e-06 9 136 .. 646433 646597 .. 646425 646599 .] 646599 0.89 >> RL|S1|C10699 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 29.1 1.2 2.9e-06 9 135 .. 162 3 .. 171 1 .. 5139 0.89 >> RL|S1|C9109 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 27.6 1.4 8e-06 9 124 .. 159 11 .. 168 1 .. 11062 0.88 >> RL|S1|C10080 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 27.5 2.9 8.8e-06 9 121 .. 5478 5629 .] 5469 5629 .] 5629 0.90 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (1381 nodes) Target sequences: 19485 (310062946 residues searched) Residues passing SSV filter: 9658093 (0.0311); expected (0.02) Residues passing bias filter: 6369653 (0.0205); expected (0.02) Residues passing Vit filter: 363021 (0.00117); expected (0.003) Residues passing Fwd filter: 111541 (0.00036); expected (3e-05) Total number of hits: 78 (0.000232) # CPU time: 50.23u 0.56s 00:00:50.79 Elapsed: 00:00:06.35 # Mc/sec: 67432.59 // [ok]