# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to sq len strand E-value score bias description of target #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- RL|S1|C4285 - archaea - 10 1378 49313 50859 49305 50862 210921 + 2.9e-219 734.3 20.7 - RL|S1|C15554 - archaea - 10 1378 769155 767654 769166 767651 769323 - 6.5e-219 733.1 34.9 - RL|S1|C3649 - archaea - 10 1378 53723 55232 53715 55235 126892 + 2.4e-216 724.6 34.1 - RL|S1|C328 - archaea - 10 1378 5966 4514 5974 4511 307223 - 2.1e-214 718.2 21.8 - RL|S1|C15246 - archaea - 10 1378 5362 3914 5371 3911 5605 - 2.7e-214 717.8 25.7 - RL|S1|C8891 - archaea - 10 1378 213 1661 204 1664 5572 + 2.7e-214 717.8 25.7 - RL|S1|C7679 - archaea - 10 1378 244 1692 236 1695 5559 + 2.8e-214 717.8 25.7 - RL|S1|C1410 - archaea - 10 1378 414 1944 406 1947 87351 + 5.6e-213 713.5 25.1 - RL|S1|C17681 - archaea - 10 1378 17856 19386 17848 19389 24870 + 5.6e-213 713.5 25.1 - RL|S1|C11048 - archaea - 10 1378 193871 195395 193863 195398 197176 + 2.7e-212 711.2 30.2 - RL|S1|C17251 - archaea - 10 1378 471707 470183 471715 470180 472090 - 2.7e-212 711.2 30.2 - RL|S1|C18841 - archaea - 10 1378 364 1888 356 1891 38722 + 2.7e-212 711.2 30.2 - RL|S1|C4033 - archaea - 10 1378 3618 2094 3626 2091 338776 - 2.7e-212 711.2 30.2 - RL|S1|C18954 - archaea - 10 1378 1899 383 1907 380 118680 - 1.5e-208 698.8 18.0 - RL|S1|C9525 - archaea - 10 1378 360872 359356 360880 359353 436114 - 1.5e-208 698.8 18.0 - RL|S1|C983 - archaea - 11 1378 1768 253 1776 250 2060 - 1.3e-207 695.8 18.5 - RL|S1|C6421 - archaea - 10 1378 6208 4752 6216 4749 777941 - 3.4e-207 694.3 30.1 - RL|S1|C9368 - archaea - 10 1378 1897 381 1905 378 118175 - 1.1e-204 686.0 16.9 - RL|S1|C11782 - archaea - 11 1378 359053 357538 359061 357535 434084 - 1.5e-203 682.3 18.2 - RL|S1|C1061 - archaea - 10 1377 5489 3973 5497 3969 5742 - 1.8e-202 678.7 13.8 - RL|S1|C15556 - archaea - 10 1377 1584 68 1592 64 169233 - 1.8e-202 678.7 13.8 - RL|S1|C16306 - archaea - 10 1377 1581 65 1589 61 79789 - 1.8e-202 678.7 13.8 - RL|S1|C16600 - archaea - 192 1378 2 1308 1 1311 1008346 + 3.1e-202 677.9 24.8 - RL|S1|C12411 - archaea - 192 1378 2 1308 1 1311 1005863 + 5e-202 677.2 24.4 - RL|S1|C10560 - archaea - 192 1378 2 1308 1 1311 995657 + 7.5e-202 676.6 24.4 - RL|S1|C610 - archaea - 65 1272 2 1297 1 1297 1297 + 1.8e-199 668.8 11.9 - RL|S1|C17806 - archaea - 10 1378 1899 383 1907 380 119435 - 5.1e-199 667.2 16.8 - RL|S1|C14115 - archaea - 192 1378 3 1309 1 1312 1152509 + 6.6e-199 666.9 24.1 - RL|S1|C4952 - archaea - 10 1378 2064 548 2070 545 2083 - 7e-199 666.8 22.4 - RL|S1|C11517 - archaea - 9 1378 5397 3877 5404 3874 5632 - 2.2e-198 665.2 24.3 - RL|S1|C9292 - archaea - 193 1378 3 1308 1 1311 976922 + 2.3e-196 658.5 23.6 - RL|S1|C274 - archaea - 10 1378 1896 380 1904 377 119339 - 5.2e-196 657.3 16.5 - RL|S1|C16295 - archaea - 10 1378 1900 384 1908 381 135069 - 5.7e-196 657.2 17.0 - RL|S1|C899 - archaea - 11 1378 519705 518190 519713 518187 593983 - 4.3e-194 651.0 18.2 - RL|S1|C8086 - archaea - 11 1378 490740 489225 490748 489222 565017 - 2.9e-191 641.6 18.7 - RL|S1|C19147 - archaea - 11 1378 521009 519494 521017 519491 593364 - 7.7e-191 640.2 19.0 - RL|S1|C8876 - archaea - 216 1377 408719 407454 408720 407450 408720 - 1e-180 606.7 11.5 - RL|S1|C2427 - archaea - 218 1377 210887 209624 210887 209620 210887 - 1e-179 603.4 11.1 - RL|S1|C11515 - archaea - 178 1202 29 1143 9 1144 1144 + 4.4e-173 581.4 28.2 - RL|S1|C12495 - archaea - 111 1116 3 1075 1 1076 1076 + 5.8e-160 538.0 16.3 - RL|S1|C11970 - archaea - 511 1378 2564 1651 2568 1648 2569 - 8.9e-147 494.3 7.7 - RL|S1|C12579 - archaea - 611 1378 3 823 1 826 2827 + 5.5e-132 445.3 9.3 - RL|S1|C8248 - archaea - 41 886 976 35 1004 14 1065 - 6.4e-127 428.6 19.9 - RL|S1|C17184 - archaea - 84 886 1 849 1 851 851 + 6.6e-125 421.9 20.3 - RL|S1|C2111 - archaea - 661 1329 1 689 1 710 724 + 2.2e-115 390.4 6.3 - RL|S1|C6814 - archaea - 768 1378 38569 37901 38589 37898 46117 - 1.9e-105 357.4 8.7 - RL|S1|C15855 - archaea - 10 786 874 1 882 1 1837 - 4.3e-97 329.8 12.7 - RL|S1|C9292 - archaea - 211 772 976921 976298 976922 976287 976922 - 2.6e-75 257.7 16.1 - RL|S1|C3681 - archaea - 889 1377 552 13 564 9 564 - 2.9e-75 257.5 4.6 - RL|S1|C8005 - archaea - 10 649 17 754 10 756 757 + 1.3e-65 225.6 16.3 - RL|S1|C9338 - archaea - 10 599 93804 94496 93796 94505 94507 + 1.7e-65 225.2 7.5 - RL|S1|C9497 - archaea - 1115 1378 2 300 1 303 475 + 1.2e-35 126.4 6.4 - RL|S1|C12392 - archaea - 56 367 428 74 437 20 441 - 5e-35 124.3 3.9 - RL|S1|C14419 - archaea - 1161 1378 3 252 1 255 62920 + 1.9e-28 102.6 4.2 - RL|S1|C6271 - archaea - 10 236 8427 8699 8416 8701 8701 + 6.5e-25 90.8 2.9 - RL|S1|C14755 - archaea - 10 315 135 481 127 486 486 + 1.7e-24 89.4 12.1 - RL|S1|C6523 - archaea - 10 240 18241 18492 18230 18493 18493 + 7e-23 84.1 4.4 - RL|S1|C12990 - archaea - 9 263 291 17 299 4 90759 - 1.4e-21 79.7 10.2 - RL|S1|C14902 - archaea - 10 236 18215 18462 18204 18464 18464 + 4.9e-21 78.0 3.8 - RL|S1|C16304 - archaea - 10 232 18217 18460 18206 18462 18462 + 1.6e-20 76.3 3.5 - RL|S1|C13557 - archaea - 10 230 274 2 283 1 31411 - 4.4e-20 74.8 4.9 - RL|S1|C1636 - archaea - 10 188 227 3 237 1 818 - 9.5e-14 53.9 2.3 - RL|S1|C9984 - archaea - 9 148 10529 10707 10520 10719 10725 + 3.8e-13 51.9 1.6 - RL|S1|C10727 - archaea - 9 176 222622 222834 222614 222839 222839 + 1.6e-11 46.5 4.2 - RL|S1|C14907 - archaea - 10 146 270717 270868 270706 270869 270869 + 1.3e-10 43.4 2.7 - RL|S1|C11590 - archaea - 10 141 270573 270719 270562 270722 270722 + 3.3e-10 42.1 2.3 - RL|S1|C5534 - archaea - 10 144 262172 262321 262161 262321 262321 + 2.9e-09 39.0 2.7 - RL|S1|C3348 - archaea - 10 134 237909 238048 237898 238049 238049 + 1e-08 37.2 2.1 - RL|S1|C10961 - archaea - 9 181 213 9 222 4 15115 - 2.3e-08 36.0 2.2 - RL|S1|C9012 - archaea - 10 180 208 6 218 2 21258 - 2.3e-08 36.0 2.1 - RL|S1|C792 - archaea - 10 148 204 33 214 8 7097 - 4.5e-08 35.1 0.9 - RL|S1|C7556 - archaea - 9 144 1650 1823 1642 1826 1826 + 4.4e-07 31.8 2.6 - RL|S1|C19078 - archaea - 9 143 1748 1920 1740 1922 1922 + 5.9e-07 31.4 2.7 - RL|S1|C12698 - archaea - 10 127 222696 222860 222687 222863 222863 + 1.8e-06 29.7 3.6 - RL|S1|C1599 - archaea - 9 136 646433 646597 646425 646599 646599 + 2.7e-06 29.2 3.8 - RL|S1|C10699 - archaea - 9 135 162 3 171 1 5139 - 2.9e-06 29.1 1.2 - RL|S1|C9109 - archaea - 9 124 159 11 168 1 11062 - 8e-06 27.6 1.4 - RL|S1|C10080 - archaea - 9 121 5478 5629 5469 5629 5629 + 8.8e-06 27.5 2.9 - # # Program: nhmmer # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_archaea.hmm # Target file: - # Option settings: nhmmer -o ssu/ssu.archaea.txt --tblout ssu/ssu.archaea.table.txt --noali -E 1e-05 --cpu 8 /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_archaea.hmm - # Current dir: /nfs/cds-shini.ethz.ch/exports/biol_micro_cds_gr_sunagawa/scratch/hans/MG_COURSE_FALL2018/binning_checkm/metag_low_complex # Date: Sat Oct 27 22:13:40 2018 # [ok]