# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to sq len strand E-value score bias description of target #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- RH|P|C23380 - bacteria - 30 1514 28465 29953 28444 29962 148591 + 0 1402.7 22.7 - RH|P|C23720 - bacteria - 28 1514 21721 23280 21699 23289 26521 + 0 1400.8 22.5 - RH|P|C6689 - bacteria - 30 1514 202044 200556 202065 200547 210101 - 0 1399.2 23.5 - RH|P|C27970 - bacteria - 31 1514 14 1570 3 1579 141496 + 0 1398.5 24.5 - RH|P|C24315 - bacteria - 31 1515 17 1574 3 1583 341656 + 0 1398.1 24.2 - RH|P|C27270 - bacteria - 30 1514 5282 3718 5303 3709 119648 - 0 1397.1 22.6 - RH|P|C36214 - bacteria - 30 1514 5237 3673 5258 3664 119594 - 0 1397.1 22.6 - RH|P|C39319 - bacteria - 30 1514 45 1609 24 1618 64444 + 0 1397.1 22.6 - RH|P|C3842 - bacteria - 29 1514 5191 3702 5212 3693 739288 - 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1.1e-10 47.9 0.5 - RH|P|C40660 - bacteria - 32 101 71 2 93 1 172396 - 1.2e-10 47.8 0.5 - RH|P|C20166 - bacteria - 31 103 247470 247542 247450 247559 247566 + 1.2e-10 47.8 1.3 - RH|P|C38876 - bacteria - 34 103 11455 11524 11434 11541 11546 + 1.3e-10 47.8 0.9 - RH|P|C31959 - bacteria - 29 101 91627 91699 91606 91705 91706 + 1.3e-10 47.7 0.7 - RH|P|C19460 - bacteria - 29 98 71 2 90 1 159517 - 1.3e-10 47.7 0.2 - RH|P|C12571 - bacteria - 30 98 23456 23524 23436 23525 23525 + 1.6e-10 47.4 0.2 - RH|P|C4812 - bacteria - 30 102 17790 17862 17768 17875 17876 + 1.7e-10 47.3 1.8 - RH|P|C28134 - bacteria - 34 100 262 196 282 190 424 - 1.8e-10 47.3 0.4 - RH|P|C16655 - bacteria - 33 103 107 37 131 12 72075 - 2.1e-10 47.1 1.9 - RH|P|C34931 - bacteria - 30 98 213407 213475 213386 213475 213475 + 2.1e-10 47.0 0.8 - RH|P|C21783 - bacteria - 31 101 36050 36120 36029 36126 36127 + 2.5e-10 46.8 1.0 - RH|P|C14145 - bacteria - 30 101 81 10 103 2 15526 - 2.7e-10 46.7 1.7 - RH|P|C22464 - bacteria - 33 98 46287 46352 46265 46353 46353 + 3.5e-10 46.3 0.9 - RH|P|C15476 - bacteria - 33 102 695 764 675 779 783 + 3.6e-10 46.3 1.9 - RH|P|C15329 - bacteria - 31 97 86714 86780 86694 86780 86780 + 3.7e-10 46.2 0.1 - RH|P|C38175 - bacteria - 31 98 314606 314673 314585 314673 314673 + 3.9e-10 46.2 1.0 - RH|P|C38850 - bacteria - 35 96 1648 1587 1668 1578 754356 - 5.9e-10 45.5 0.3 - RH|P|C31176 - bacteria - 31 97 67 1 88 1 63596 - 6.1e-10 45.5 0.5 - RH|P|C35744 - bacteria - 32 100 21988 22056 21967 22056 22056 + 7.3e-10 45.2 0.5 - RH|P|C33585 - bacteria - 237 567 702 370 722 351 991 - 9.5e-10 44.9 4.0 - RH|P|C19398 - bacteria - 34 125 111 5 132 2 104822 - 9.8e-10 44.8 1.1 - RH|P|C29155 - bacteria - 30 96 9173 9239 9151 9239 9239 + 1.2e-09 44.5 0.0 - RH|P|C36351 - bacteria - 30 96 72807 72873 72785 72873 72873 + 1.3e-09 44.4 0.0 - RH|P|C16821 - bacteria - 30 96 47558 47624 47538 47624 47624 + 1.5e-09 44.2 0.2 - RH|P|C16099 - bacteria - 35 96 17188 17249 17168 17249 17249 + 1.5e-09 44.2 0.6 - RH|P|C17714 - bacteria - 34 96 262 200 282 195 59418 - 1.6e-09 44.1 0.4 - RH|P|C27389 - bacteria - 30 98 70 2 90 1 70576 - 1.6e-09 44.1 0.6 - RH|P|C8019 - bacteria - 31 119 22899 22987 22879 22991 22991 + 1.7e-09 44.0 1.8 - RH|P|C7496 - bacteria - 32 98 68 2 90 1 27228 - 2e-09 43.8 0.6 - RH|P|C20504 - bacteria - 30 95 66 1 86 1 294 - 4.4e-09 42.6 1.6 - RH|P|C29820 - bacteria - 31 95 64751 64815 64730 64815 64815 + 4.5e-09 42.6 0.3 - RH|P|C28327 - bacteria - 37 101 100339 100403 100318 100408 100408 + 5.2e-09 42.4 1.8 - RH|P|C22212 - bacteria - 35 101 72 6 93 1 16790 - 6.6e-09 42.1 1.1 - RH|P|C25846 - bacteria - 32 101 81 12 102 2 64968 - 8.4e-09 41.7 2.8 - RH|P|C4569 - bacteria - 33 95 509425 509487 509403 509487 509487 + 8.6e-09 41.7 0.7 - RH|P|C4278 - bacteria - 30 94 62600 62664 62580 62664 62664 + 1.3e-08 41.1 0.0 - RH|P|C36554 - bacteria - 1385 1516 2 137 1 145 3949 + 1.4e-08 41.0 7.8 - RH|P|C26733 - bacteria - 30 94 65 1 84 1 25700 - 1.4e-08 41.0 0.1 - RH|P|C4482 - bacteria - 30 101 9752 9823 9733 9833 9834 + 1.6e-08 40.8 0.8 - RH|P|C13844 - bacteria - 36 101 1141 1206 1121 1226 6584 + 2.3e-08 40.3 2.0 - RH|P|C19342 - bacteria - 36 102 9608 9674 9587 9687 9689 + 2.7e-08 40.1 1.9 - RH|P|C23743 - bacteria - 31 98 651183 651250 651160 651251 651251 + 3.5e-08 39.7 1.6 - RH|P|C205 - bacteria - 242 562 693 370 707 350 739 - 5.7e-08 39.0 3.5 - RH|P|C26783 - bacteria - 34 95 62 1 84 1 56501 - 5.7e-08 39.0 0.5 - RH|P|C5327 - bacteria - 35 99 4743 4807 4722 4827 4830 + 7.9e-08 38.5 2.1 - RH|P|C40533 - bacteria - 37 95 59 1 79 1 73159 - 8.4e-08 38.4 0.8 - RH|P|C24537 - bacteria - 238 562 938 611 959 591 1052 - 1.9e-07 37.3 3.8 - RH|P|C23743 - bacteria - 31 94 64 1 86 1 651251 - 2.8e-07 36.7 1.3 - RH|P|C33549 - bacteria - 31 91 15356 15416 15335 15416 15416 + 2.9e-07 36.6 0.6 - RH|P|C36517 - bacteria - 32 91 49677 49736 49656 49736 49736 + 5.2e-07 35.8 0.2 - RH|P|C31017 - bacteria - 238 562 274 601 253 621 1652 + 6.2e-07 35.5 3.5 - RH|P|C31031 - bacteria - 33 90 58 1 78 1 6618 - 6.2e-07 35.5 0.0 - RH|P|C33978 - bacteria - 238 562 256 583 235 603 1431 + 6.6e-07 35.4 3.4 - RH|P|C26241 - bacteria - 37 93 57 1 77 1 73423 - 6.8e-07 35.4 0.7 - RH|P|C7397 - bacteria - 32 90 59 1 80 1 12644 - 7.3e-07 35.3 0.3 - RH|P|C14497 - bacteria - 32 90 59 1 80 1 273141 - 1.6e-06 34.2 0.2 - RH|P|C31951 - bacteria - 37 92 56 1 76 1 73402 - 1.6e-06 34.2 0.5 - RH|P|C16477 - bacteria - 30 89 1070 1129 1050 1129 1129 + 2.4e-06 33.6 0.0 - RH|P|C23214 - bacteria - 35 89 55 1 74 1 69879 - 2.4e-06 33.6 0.6 - RH|P|C10480 - bacteria - 29 89 1711 1771 1692 1771 1771 + 2.5e-06 33.5 0.0 - RH|P|C32367 - bacteria - 1419 1515 1371 1467 1350 1476 1532 + 2.9e-06 33.3 7.1 - RH|P|C39704 - bacteria - 32 88 57 1 77 1 37839 - 3.8e-06 32.9 0.0 - RH|P|C41092 - bacteria - 1400 1515 4066 3951 4067 3942 4067 - 5.4e-06 32.4 2.5 - RH|P|C11133 - bacteria - 35 90 35458 35513 35439 35513 35513 + 6.3e-06 32.2 0.6 - RH|P|C2018 - bacteria - 30 88 12719 12777 12700 12777 12777 + 6.5e-06 32.2 0.0 - # # Program: nhmmer # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_bacteria.hmm # Target file: - # Option settings: nhmmer -o ssu/ssu.bacteria.txt --tblout ssu/ssu.bacteria.table.txt --noali -E 1e-05 --cpu 8 /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_bacteria.hmm - # Current dir: /nfs/cds-shini.ethz.ch/exports/biol_micro_cds_gr_sunagawa/scratch/hans/MG_COURSE_FALL2018/binning_checkm/metag_high_complex # Date: Sun Oct 28 02:47:53 2018 # [ok]