# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to sq len strand E-value score bias description of target #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- RH|P|C16167 - archaea - 4 1378 171959 170488 171962 170485 438352 - 0 1195.6 39.1 - RH|P|C26056 - archaea - 4 1378 64049 65520 64046 65523 84838 + 0 1195.6 39.1 - RH|P|C24442 - archaea - 3 1378 66180 67652 66178 67655 127782 + 0 1172.3 40.3 - RH|P|C10216 - archaea - 3 1378 615714 617186 615712 617189 845933 + 0 1164.6 39.0 - RH|P|C23693 - archaea - 3 1378 171294 169822 171296 169819 866396 - 0 1141.0 43.0 - RH|P|C1081 - archaea - 3 1378 171363 169891 171365 169888 226580 - 0 1136.9 43.4 - RH|P|C9439 - archaea - 3 1378 590193 591665 590191 591668 802476 + 0 1136.1 39.8 - RH|P|C25947 - archaea - 3 1378 171816 170344 171818 170341 955351 - 0 1135.7 44.3 - RH|P|C11956 - archaea - 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2.2e-07 37.0 0.8 - RH|P|C4009 - archaea - 10 178 25828 26030 25820 26037 26039 + 3.3e-07 36.4 2.0 - RH|P|C27364 - archaea - 11 146 720851 721016 720842 721026 721027 + 3.5e-07 36.3 1.5 - RH|P|C11191 - archaea - 10 126 150 1 160 1 39046 - 3.6e-07 36.2 2.2 - RH|P|C11904 - archaea - 11 201 229 2 239 1 61792 - 3.8e-07 36.2 2.3 - RH|P|C17485 - archaea - 10 144 170 5 178 2 49085 - 3.9e-07 36.1 0.8 - RH|P|C33093 - archaea - 10 186 232 16 240 1 104779 - 4.3e-07 36.0 1.5 - RH|P|C14532 - archaea - 10 130 60120 60285 60112 60287 60287 + 4.5e-07 35.9 2.8 - RH|P|C3976 - archaea - 10 146 21572 21737 21564 21748 21750 + 4.6e-07 35.9 2.0 - RH|P|C40184 - archaea - 10 143 171 1 179 1 93546 - 4.7e-07 35.9 0.5 - RH|P|C2261 - archaea - 10 142 124500 124671 124492 124673 124673 + 8.6e-07 35.0 0.5 - RH|P|C22056 - archaea - 10 125 148 6 158 2 118123 - 9.4e-07 34.9 1.8 - RH|P|C7984 - archaea - 12 144 184 18 194 3 285902 - 9.5e-07 34.8 1.8 - RH|P|C35163 - archaea - 10 197 88907 89119 88898 89120 89120 + 1e-06 34.7 2.0 - RH|P|C40383 - archaea - 11 148 754791 754958 754782 754971 754971 + 1.5e-06 34.2 1.5 - RH|P|C19702 - archaea - 9 125 163 2 170 1 131213 - 2.4e-06 33.5 2.7 - RH|P|C31605 - archaea - 11 194 136497 136717 136487 136720 136720 + 2.6e-06 33.4 2.4 - RH|P|C4007 - archaea - 9 201 104095 104312 104087 104312 104312 + 2.7e-06 33.4 2.2 - RH|P|C23374 - archaea - 44 155 180 33 201 12 136299 - 2.9e-06 33.3 2.1 - RH|P|C26599 - archaea - 12 152 219 44 229 19 285560 - 3.6e-06 32.9 1.9 - RH|P|C38755 - archaea - 12 152 219 44 229 19 45043 - 3.6e-06 32.9 1.9 - RH|P|C84 - archaea - 10 140 186 343 178 344 344 + 5.5e-06 32.3 0.8 - RH|P|C26913 - archaea - 12 152 238 63 248 38 285724 - 6.1e-06 32.2 2.5 - RH|P|C39914 - archaea - 10 142 162 1 170 1 17966 - 6.3e-06 32.1 2.2 - RH|P|C18985 - archaea - 10 137 160 2 168 1 14751 - 7.6e-06 31.9 1.2 - RH|P|C27663 - archaea - 10 134 105208 105361 105200 105362 105362 + 9.7e-06 31.5 4.1 - # # Program: nhmmer # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_archaea.hmm # Target file: - # Option settings: nhmmer -o ssu/ssu.archaea.txt --tblout ssu/ssu.archaea.table.txt --noali -E 1e-05 --cpu 8 /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_archaea.hmm - # Current dir: /nfs/cds-shini.ethz.ch/exports/biol_micro_cds_gr_sunagawa/scratch/hans/MG_COURSE_FALL2018/binning_checkm/metag_high_complex # Date: Sun Oct 28 02:49:36 2018 # [ok]