# nhmmer :: search a DNA model or alignment against a DNA database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query file:                      /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_bacteria.hmm
# target sequence database:        -
# output directed to file:         ssu/ssu.bacteria.txt
# hits tabular output:             ssu/ssu.bacteria.table.txt
# show alignments in output:       no
# sequence reporting threshold:    E-value <= 1e-05
# number of worker threads:        8
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       bacteria  [M=1523]
Scores for complete hits:
    E-value  score  bias  Sequence                start    end  Description
    ------- ------ -----  --------                -----  -----  -----------
   1.8e-256  852.5  26.6  255_T16_Agrococcus_415   1260   2234  
   2.4e-256  852.1  24.8  255_T16_Agrococcus_235    971      1  
   1.8e-188  627.3   8.7  255_T16_Agrococcus_397   2309   1621  
    1.6e-52  177.0   4.3  255_T16_Agrococcus_633      1    240  


Annotation for each hit :
>> 255_T16_Agrococcus_415  
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  852.5  26.6  1.8e-256        22       954 ..      1260      2234 .]      1240      2234 .]      2234    0.94

>> 255_T16_Agrococcus_235  
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  852.1  24.8  2.4e-256        26       954 ..       971         1 ..       992         1 ..      3869    0.94

>> 255_T16_Agrococcus_397  
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  627.3   8.7  1.8e-188       829      1514 ..      2309      1621 ..      2310      1612 ..      2310    0.97

>> 255_T16_Agrococcus_633  
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  177.0   4.3   1.6e-52      1275      1514 ..         1       240 [.         1       249 [.      1531    0.95



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (1523 nodes)
Target sequences:                         1005  (7678790 residues searched)
Residues passing SSV filter:            186965  (0.0243); expected (0.02)
Residues passing bias filter:           145455  (0.0189); expected (0.02)
Residues passing Vit filter:             12000  (0.00156); expected (0.003)
Residues passing Fwd filter:              4064  (0.000529); expected (3e-05)
Total number of hits:                        4  (0.000374)
# CPU time: 1.44u 0.09s 00:00:01.53 Elapsed: 00:00:00.28
# Mc/sec: 40326.89
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