# nhmmer :: search a DNA model or alignment against a DNA database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query file:                      /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_archaea.hmm
# target sequence database:        -
# output directed to file:         ssu/ssu.archaea.txt
# hits tabular output:             ssu/ssu.archaea.table.txt
# show alignments in output:       no
# sequence reporting threshold:    E-value <= 1e-05
# number of worker threads:        8
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       archaea  [M=1381]
Scores for complete hits:
    E-value  score  bias  Sequence                start    end  Description
    ------- ------ -----  --------                -----  -----  -----------
   8.9e-133  442.6  27.6  255_T16_Agrococcus_415   1283   2234  
   4.5e-131  437.0  25.3  255_T16_Agrococcus_235    952      1  
     1e-108  363.0   7.5  255_T16_Agrococcus_397   2309   1627  
    7.4e-28   95.3   3.5  255_T16_Agrococcus_633      1    234  


Annotation for each hit :
>> 255_T16_Agrococcus_415  
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  442.6  27.6  8.9e-133        10       880 ..      1283      2234 .]      1272      2234 .]      2234    0.91

>> 255_T16_Agrococcus_235  
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  437.0  25.3  4.5e-131        10       880 ..       952         1 ..       963         1 ..      3869    0.91

>> 255_T16_Agrococcus_397  
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  363.0   7.5    1e-108       754      1378 ..      2309      1627 ..      2310      1624 ..      2310    0.92

>> 255_T16_Agrococcus_633  
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   95.3   3.5   7.4e-28      1174      1378 ..         1       234 [.         1       237 [.      1531    0.92



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (1381 nodes)
Target sequences:                         1005  (7678790 residues searched)
Residues passing SSV filter:            386601  (0.0503); expected (0.02)
Residues passing bias filter:           176571  (0.023); expected (0.02)
Residues passing Vit filter:              6198  (0.000807); expected (0.003)
Residues passing Fwd filter:              4094  (0.000533); expected (3e-05)
Total number of hits:                        4  (0.000367)
# CPU time: 1.31u 0.06s 00:00:01.37 Elapsed: 00:00:00.23
# Mc/sec: 46106.13
//
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