# target name        accession  query name           accession  hmmfrom hmm to alifrom  ali to envfrom  env to  sq len strand   E-value  score  bias  description of target
#------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- ---------------------
NZ_CP019035.1        -          bacteria             -               27    1514  465535  467086  465514  467096 4609911    +           0 1353.8  25.9  Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genome
NZ_CP019035.1        -          bacteria             -               27    1514  508865  510416  508844  510426 4609911    +           0 1353.8  25.9  Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genome
NZ_CP019035.1        -          bacteria             -               27    1514  668122  669673  668101  669683 4609911    +           0 1353.8  25.9  Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genome
NZ_CP019035.1        -          bacteria             -               27    1514  762659  764210  762638  764220 4609911    +           0 1353.8  25.9  Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genome
NZ_CP019035.1        -          bacteria             -               27    1514 1449183 1450734 1449162 1450744 4609911    +           0 1353.8  25.9  Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genome
NZ_CP019035.1        -          bacteria             -               27    1514 3853959 3852408 3853980 3852398 4609911    -           0 1353.8  25.9  Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genome
NZ_CP019035.1        -          bacteria             -               27    1514 4559197 4557646 4559218 4557636 4609911    -           0 1353.8  25.9  Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genome
#
# Program:         nhmmer
# Version:         3.1b2 (February 2015)
# Pipeline mode:   SEARCH
# Query file:      /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_bacteria.hmm
# Target file:     -
# Option settings: nhmmer -o ssu/ssu.bacteria.txt --tblout ssu/ssu.bacteria.table.txt --noali -E 1e-05 --cpu 8 /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_bacteria.hmm - 
# Current dir:     /nfs/cds-shini.ethz.ch/exports/biol_micro_cds_gr_sunagawa/scratch/hans/MG_COURSE_FALL2018/binning_checkm/reference_genome
# Date:            Sat Oct 27 20:41:46 2018
# [ok]