# target name        accession  query name           accession  hmmfrom hmm to alifrom  ali to envfrom  env to  sq len strand   E-value  score  bias  description of target
#------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- ---------------------
NZ_CP019035.1        -          archaea              -               41    1378  465583  467080  465555  467083 4609911    +    2.3e-202  673.3  26.4  Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genome
NZ_CP019035.1        -          archaea              -               41    1378  508913  510410  508885  510413 4609911    +    2.3e-202  673.3  26.4  Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genome
NZ_CP019035.1        -          archaea              -               41    1378  668170  669667  668142  669670 4609911    +    2.3e-202  673.3  26.4  Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genome
NZ_CP019035.1        -          archaea              -               41    1378  762707  764204  762679  764207 4609911    +    2.3e-202  673.3  26.4  Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genome
NZ_CP019035.1        -          archaea              -               41    1378 1449231 1450728 1449203 1450731 4609911    +    2.3e-202  673.3  26.4  Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genome
NZ_CP019035.1        -          archaea              -               41    1378 3853911 3852414 3853939 3852411 4609911    -    2.3e-202  673.3  26.4  Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genome
NZ_CP019035.1        -          archaea              -               41    1378 4559149 4557652 4559177 4557649 4609911    -    2.3e-202  673.3  26.4  Salmonella enterica subsp. enterica serovar Gallinarum str. 9184, complete genome
#
# Program:         nhmmer
# Version:         3.1b2 (February 2015)
# Pipeline mode:   SEARCH
# Query file:      /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_archaea.hmm
# Target file:     -
# Option settings: nhmmer -o ssu/ssu.archaea.txt --tblout ssu/ssu.archaea.table.txt --noali -E 1e-05 --cpu 8 /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_archaea.hmm - 
# Current dir:     /nfs/cds-shini.ethz.ch/exports/biol_micro_cds_gr_sunagawa/scratch/hans/MG_COURSE_FALL2018/binning_checkm/reference_genome
# Date:            Sat Oct 27 20:41:46 2018
# [ok]