# nhmmer :: search a DNA model or alignment against a DNA database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query file: /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_euk.hmm # target sequence database: - # output directed to file: ssu/ssu.euk.txt # hits tabular output: ssu/ssu.euk.table.txt # show alignments in output: no # sequence reporting threshold: E-value <= 1e-05 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: silva.eukarya [M=1734] Scores for complete hits: E-value score bias Sequence start end Description ------- ------ ----- -------- ----- ----- ----------- 4.6e-83 278.6 5.2 CARSEP3_4 790 36 id=20220 bin=CARSEP3 alias=CARSEP3_560 3.1e-76 256.0 19.1 CARPRO_18 4538 3779 id=20114 bin=CARPRO alias=CARPRO_23 5.7e-39 132.5 7.4 CARSEP3_12 334 5 id=20228 bin=CARSEP3 alias=CARSEP3_523 4.8e-14 50.0 6.4 CARSEP3_8 66983 67138 id=20224 bin=CARSEP3 alias=CARSEP3_507 8.1e-12 42.6 6.0 CARSEP3_14 84880 85384 id=20230 bin=CARSEP3 alias=CARSEP3_505 1.2e-11 42.0 5.9 CARSEP3_4 1406 854 id=20220 bin=CARSEP3 alias=CARSEP3_560 1.2e-11 42.0 6.0 CARSEP3_12 904 400 id=20228 bin=CARSEP3 alias=CARSEP3_523 1.2e-11 42.0 5.9 CARSEP3_8 66408 66912 id=20224 bin=CARSEP3 alias=CARSEP3_507 4.3e-11 40.2 13.7 CARPRO_18 4935 4602 id=20114 bin=CARPRO alias=CARPRO_23 5.7e-11 39.8 5.2 CARSEP3_17 623 162 id=20233 bin=CARSEP3 alias=CARSEP3_528 Annotation for each hit : >> CARSEP3_4 id=20220 bin=CARSEP3 alias=CARSEP3_560 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 278.6 5.2 4.6e-83 850 1628 .. 790 36 .. 812 16 .. 185661 0.85 >> CARPRO_18 id=20114 bin=CARPRO alias=CARPRO_23 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 256.0 19.1 3.1e-76 845 1624 .. 4538 3779 .. 4559 3759 .. 5368 0.83 >> CARSEP3_12 id=20228 bin=CARSEP3 alias=CARSEP3_523 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 132.5 7.4 5.7e-39 852 1194 .. 334 5 .. 357 1 .. 128367 0.86 >> CARSEP3_8 id=20224 bin=CARSEP3 alias=CARSEP3_507 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 50.0 6.4 4.8e-14 857 1012 .. 66983 67138 .. 66956 67140 .. 67141 0.93 >> CARSEP3_14 id=20230 bin=CARSEP3 alias=CARSEP3_505 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 42.6 6.0 8.1e-12 61 622 .. 84880 85384 .. 84810 85406 .. 85517 0.55 >> CARSEP3_4 id=20220 bin=CARSEP3 alias=CARSEP3_560 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 42.0 5.9 1.2e-11 23 622 .. 1406 854 .. 1426 833 .. 185661 0.56 >> CARSEP3_12 id=20228 bin=CARSEP3 alias=CARSEP3_523 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 42.0 6.0 1.2e-11 61 622 .. 904 400 .. 974 379 .. 128367 0.55 >> CARSEP3_8 id=20224 bin=CARSEP3 alias=CARSEP3_507 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 42.0 5.9 1.2e-11 61 622 .. 66408 66912 .. 66338 66933 .. 67141 0.55 >> CARPRO_18 id=20114 bin=CARPRO alias=CARPRO_23 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 40.2 13.7 4.3e-11 287 617 .. 4935 4602 .. 5048 4582 .. 5368 0.71 >> CARSEP3_17 id=20233 bin=CARSEP3 alias=CARSEP3_528 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- ! 39.8 5.2 5.7e-11 114 622 .. 623 162 .. 686 140 .. 40854 0.60 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (1734 nodes) Target sequences: 2320 (56837224 residues searched) Residues passing SSV filter: 2304240 (0.0405); expected (0.02) Residues passing bias filter: 1923785 (0.0338); expected (0.02) Residues passing Vit filter: 94315 (0.00166); expected (0.003) Residues passing Fwd filter: 42592 (0.000749); expected (3e-05) Total number of hits: 10 (8.56e-05) # CPU time: 12.47u 0.18s 00:00:12.65 Elapsed: 00:00:01.62 # Mc/sec: 60836.88 // [ok]