# nhmmer :: search a DNA model or alignment against a DNA database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query file: /usr/local/src/CheckM-1.0.7/data/hmms_ssu/SSU_archaea.hmm
# target sequence database: -
# output directed to file: ssu/ssu.archaea.txt
# hits tabular output: ssu/ssu.archaea.table.txt
# show alignments in output: no
# sequence reporting threshold: E-value <= 1e-05
# number of worker threads: 8
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: archaea [M=1381]
Scores for complete hits:
E-value score bias Sequence start end Description
------- ------ ----- -------- ----- ----- -----------
7.3e-216 720.6 37.3 CARPRO_18 5155 3647 id=20114 bin=CARPRO alias=CARPRO_23
1e-213 713.4 13.4 CARSEP3_4 1444 20 id=20220 bin=CARSEP3 alias=CARSEP3_560
7.7e-137 459.0 15.8 CARSEP3_12 990 8 id=20228 bin=CARSEP3 alias=CARSEP3_523
7.3e-100 336.5 13.8 CARSEP3_8 66322 67138 id=20224 bin=CARSEP3 alias=CARSEP3_507
1.3e-80 272.8 12.2 CARSEP3_17 752 2 id=20233 bin=CARSEP3 alias=CARSEP3_528
3e-78 265.0 16.4 CAREFA_8 769 2 id=20265 bin=CAREFA alias=CAREFA_6
3.7e-76 258.0 12.7 CARSEP3_14 84794 85517 id=20230 bin=CARSEP3 alias=CARSEP3_505
3.8e-72 244.8 15.9 CAREFA_7 63110 63843 id=20264 bin=CAREFA
1.2e-71 243.1 15.9 CAREFA_6 733 1 id=20263 bin=CAREFA alias=CAREFA_5
Annotation for each hit :
>> CARPRO_18 id=20114 bin=CARPRO alias=CARPRO_23
score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc
------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ----
! 720.6 37.3 7.3e-216 10 1378 .. 5155 3647 .. 5165 3644 .. 5368 0.92
>> CARSEP3_4 id=20220 bin=CARSEP3 alias=CARSEP3_560
score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc
------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ----
! 713.4 13.4 1e-213 10 1295 .. 1444 20 .. 1454 4 .. 185661 0.93
>> CARSEP3_12 id=20228 bin=CARSEP3 alias=CARSEP3_523
score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc
------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ----
! 459.0 15.8 7.7e-137 10 883 .. 990 8 .. 1000 4 .. 128367 0.94
>> CARSEP3_8 id=20224 bin=CARSEP3 alias=CARSEP3_507
score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc
------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ----
! 336.5 13.8 7.3e-100 10 715 .. 66322 67138 .. 66312 67141 .] 67141 0.94
>> CARSEP3_17 id=20233 bin=CARSEP3 alias=CARSEP3_528
score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc
------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ----
! 272.8 12.2 1.3e-80 10 649 .. 752 2 .. 762 1 .. 40854 0.94
>> CAREFA_8 id=20265 bin=CAREFA alias=CAREFA_6
score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc
------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ----
! 265.0 16.4 3e-78 10 655 .. 769 2 .. 778 1 .. 222047 0.92
>> CARSEP3_14 id=20230 bin=CARSEP3 alias=CARSEP3_505
score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc
------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ----
! 258.0 12.7 3.7e-76 10 622 .. 84794 85517 .] 84784 85517 .] 85517 0.94
>> CAREFA_7 id=20264 bin=CAREFA
score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc
------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ----
! 244.8 15.9 3.8e-72 10 621 .. 63110 63843 .] 63101 63843 .] 63843 0.92
>> CAREFA_6 id=20263 bin=CAREFA alias=CAREFA_5
score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc
------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ----
! 243.1 15.9 1.2e-71 10 620 .. 733 1 .. 742 1 .. 280602 0.92
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (1381 nodes)
Target sequences: 2320 (56837224 residues searched)
Residues passing SSV filter: 676239 (0.0119); expected (0.02)
Residues passing bias filter: 610741 (0.0107); expected (0.02)
Residues passing Vit filter: 35022 (0.000616); expected (0.003)
Residues passing Fwd filter: 13362 (0.000235); expected (3e-05)
Total number of hits: 9 (0.000149)
# CPU time: 7.75u 0.16s 00:00:07.91 Elapsed: 00:00:01.01
# Mc/sec: 77715.06
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